PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G02310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 282aa    MW: 29464.6 Da    PI: 7.0938
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G02310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.21.8e-40381381100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p+++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l++e
  LPERR10G02310.1  38 PCGACKFLRRKCVQGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLQQIPHHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQHQVAGLQSE 131
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l++l+++
  LPERR10G02310.1 132 LNYLQAH 138
                      **99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.32937139IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-4038136IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSSSVVLSAS SGGGGVGGGN GGGGGGNGGG GSGGGGGPCG ACKFLRRKCV QGCIFAPYFD  60
SEQGAAHFAA VHKVFGASNV SKLLQQIPHH KRLDAVVTIC YEAQARLRDP VYGCVAHIFA  120
LQHQVAGLQS ELNYLQAHLT SMEVPSPAPA QPQPLMPMTA ATAGNFNFSN LPSSSSNVPV  180
TADLSTLFEP LPATQPQWGL FQQQQPQQQQ HHHHQQQLQL QHQHQQHPYD RMGDGSSSSR  240
VGGAGDDDGS DGGDLQALAR ELLDRHGRSA SSSKLDPPPH TQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2002361e-113AB200236.1 Oryza sativa Japonica Group CRLL2 mRNA for LOB domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613830.11e-107PREDICTED: LOB domain-containing protein 30
SwissprotO813232e-65LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0D9XHZ10.0A0A0D9XHZ1_9ORYZ; Uncharacterized protein
STRINGBGIOSGA032254-PA1e-107(Oryza sativa Indica Group)
STRINGLOC_Os10g07510.11e-107(Oryza sativa Japonica Group)
STRINGORGLA10G0025200.11e-107(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-58LBD family protein