PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G12940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 684aa    MW: 73517.3 Da    PI: 4.6562
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G12940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-1680130153
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                      + ++GVr++ + g+Wv+e+r+p   g +  r +lg+f+ta+ Aa+a++aa+++l
  LPERR09G12940.1  80 PVFRGVRRRGNAGKWVCEVRVP---GrRGCRLWLGTFDTADAAARAHDAAMLAL 130
                      579******************9...6445**********************986 PP

2AP230.49.5e-10439474138
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgt 38 
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f  
  LPERR09G12940.1 439 PVFRGVRRRGRAGRWVCEVRVP---GrRGCRLWLGTFAD 474
                      579******************9...6445********86 PP

3AP233.11.4e-105115511355
              AP2  13 grWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      grWv+e+r+p   g +  r +lg+f  ae Aa+a++aa ++l g
  LPERR09G12940.1 511 GRWVCEVRVP---GrRGCRLWLGTFADAETAARAHDAAVLALSG 551
                      9********9...6445*********************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1280130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2481147IPR001471AP2/ERF domain
PROSITE profilePS5103219.5281145IPR001471AP2/ERF domain
SMARTSM003801.0E-1481151IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1481144IPR016177DNA-binding domain
PfamPF008471.7E-5439473IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-7440479IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-13440478IPR001471AP2/ERF domain
SMARTSM003800.0017440497IPR001471AP2/ERF domain
PROSITE profilePS5103218.136440559IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-21510561IPR001471AP2/ERF domain
PfamPF008471.0E-4510549IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-13510561IPR016177DNA-binding domain
SMARTSM003804.1E-10511565IPR001471AP2/ERF domain
CDDcd000181.58E-14511561No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MGVLFADYGY YPGCGMLPRT YEDSGDKMHI NELDMEMSGE SWMSSSPCSS SPEQQQHQTV  60
WTSPPKRPAG RTKFRETRHP VFRGVRRRGN AGKWVCEVRV PGRRGCRLWL GTFDTADAAA  120
RAHDAAMLAL AAGGDSGETC CLNFADSAWL LAVPSSYRSL ADVRHAVAEA VEDFLQRRHR  180
RDDDAMSATS SSAPSSSLTD DEESSSSSSS PGTNLAFELD DVMGDMGWDL YYASLAQGML  240
MAPPFAAAAF GDDGEANLAD VMNSSSPSPS SSSGAETDSS SSSSSQNAAA PAPKRPAGRT  300
KFRETRHPVF RGVRRRGGAG RDSAWLLAVP PAVAPSDLAA VRRAATDAVA AFLKRTNAAA  360
NAMDEATSGV SPPPPIIVDN ACSSEMPRES GEGTAATATA ALDMFELDFF GEMDYDMTVW  420
SEPPKRPAGR TKFRETRHPV FRGVRRRGRA GRWVCEVRVP GRRGCRLWLG TFADGDAASS  480
FSSPANDMAF ELDDVLGDMG WDLYYASLAX GRWVCEVRVP GRRGCRLWLG TFADAETAAR  540
AHDAAVLALS GTDACLNFAD SAWLMPPVSV AAGGGAREVK DAVADAVEAF QRQRRRQTPS  600
SSPAETADEY EDDEEMKGFS PAAAIPVVQD GEFELDDAFR WDGMDAGSYY ASLAQGLLVE  660
PPPAAGVWWE DGEIAGSDMA LWSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8859561e-112JQ885956.1 Oryza sativa isolate UR5 DRE-binding factor 1A (DREB1A) gene, complete cds.
GenBankJQ8859551e-112JQ885955.1 Oryza sativa isolate UR14 DRE-binding factor 1A (DREB1A) gene, complete cds.
GenBankJN5611511e-112JN561151.1 Oryza sativa Indica Group DREB1A (DREB1A) gene, complete cds.
GenBankCP0126171e-112CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankAP0149651e-112AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0068591e-112AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05.
GenBankAK2876921e-112AK287692.1 Oryza sativa Japonica Group cDNA, clone: J065128G03, full insert sequence.
GenBankAK1055991e-112AK105599.1 Oryza sativa Japonica Group cDNA clone:001-200-A04, full insert sequence.
GenBankAF4944221e-112AF494422.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF1-like protein mRNA, complete cds.
GenBankAF3009701e-112AF300970.1 Oryza sativa DRE-binding protein 1A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610912.18e-95PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ64MA19e-97DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLA0A0D9XFT60.0A0A0D9XFT6_9ORYZ; Uncharacterized protein
STRINGLOC_Os09g35030.12e-94(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.19e-27C-repeat/DRE binding factor 2