PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G12890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 370aa    MW: 38188.8 Da    PI: 6.1866
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G12890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.44.6e-33102197589
              TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg... 88 
                        r+ ++h kv+gR+RR+R++++caar+ +L++eLG+++d++ti WL+qq++pai+++tgt++ +a ++               ++++s++   
  LPERR09G12890.1 102 PPRNRDRHIKVEGRGRRIRMPVKCAARVAQLTRELGHKSDGETIRWLMQQSEPAIIAATGTGTVPAIATtvdgvlrL------PTQSPSAAgga 189
                      5799*********************************************************8888854442222221......22222222222 PP

              TCP  89 .......k 89 
                              
  LPERR09G12890.1 190 qsghvveP 197
                      22234432 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136925.035105159IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-26105184IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDSQLQDKAA DEEAAVGNAA ALAGLGGYPS NQSPFMEPPL PEKADEEEMA ATAGDAADFG  60
RMGFAPIRSP PPPSAAELVP KAEPVAAAAM ELLQGMAVAK PPPRNRDRHI KVEGRGRRIR  120
MPVKCAARVA QLTRELGHKS DGETIRWLMQ QSEPAIIAAT GTGTVPAIAT TVDGVLRLPT  180
QSPSAAGGAQ SGHVVEPPAP KRRRKLQPTR AGAAPLALAP PTHAAAVYYP VVADPLLQAN  240
GGGVISISSG LAPISSTAAA VPFMAMPPGH SNGKQVMSPA TVWMVPPGAG AGAAAISQPM  300
HYWAFQTNHH DPAANFAGGS NFQHQTFHNA VAGGGEESQS QHHGGHKVNA DEPAGEENEY  360
EGMTDSSSDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205PKRRRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G12890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612634.13e-99transcription factor PCF2-like
SwissprotA2YXQ15e-75PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH65e-75PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A0D9XFT00.0A0A0D9XFT0_9ORYZ; Uncharacterized protein
STRINGLPERR09G12890.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.17e-39TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]