PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G08870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 356aa    MW: 37751 Da    PI: 7.7534
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G08870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573751.3e-23183251268
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkk 68 
                      +++r+ws+ De+v+L+Gli+f++k+g+   +++did++y ++++++s++vs +ql++K+rrLK+K++  
  LPERR09G08870.1 183 RPSRVWSQADELVILRGLITFRTKRGVlpCSTQDIDKLYGYIRGQLSATVSVTQLSDKVRRLKQKYQLL 251
                      679************************766778*********************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-18185253IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAPKRPADEA AAAGSGSDTS DAEADAARGH ASSPSPSKTP PHANPNPKSA AAAAPPSAAG  60
PESPAGSDSD SDADAARGGA RMEVDHPRPR SRSLDANSDS EDSALPVAYD DYADPAASAG  120
AGADSDDGNA SPLPPPRPSH AEAAAIKPIS SRPMDPPRRS TGGASSEPRA KRPRSAAAEH  180
SKRPSRVWSQ ADELVILRGL ITFRTKRGVL PCSTQDIDKL YGYIRGQLSA TVSVTQLSDK  240
VRRLKQKYQL LATLTMANGN GTGVTAVNAS VRGRGEFEKG KDVYPYLWET VEELSSQHPS  300
GAVFKKAFEL LEGSKAQVVE EKLRKFRLTE MRQQLRRMDL MKETLTMVLD ALEMAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G08870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2771381e-112AJ277138.1 Oryza sativa subsp. japonica partial mRNA for putative rice bicoid protein (rb gene).
GenBankAP0053931e-112AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055591e-112AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149651e-112AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-112CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661301.22e-62PREDICTED: uncharacterized protein LOC102704642, partial
RefseqXP_015611802.16e-61STOREKEEPER protein
TrEMBLA0A0D9XED40.0A0A0D9XED4_9ORYZ; Uncharacterized protein
STRINGLPERR09G08870.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14280.13e-11DNA-binding storekeeper protein-related