PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G07850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 168aa    MW: 19448.6 Da    PI: 10.0109
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G07850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.32.1e-093186156
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                     s+y+GV+  +++g+++A+ +d   +  g+ k+ + g ++t+e+Aa+a++ a +k++g+
  LPERR09G07850.1 31 SQYRGVT--RWTGKYEAHFWDnSFKkEGQAKKGRQGGYDTEEKAARAYDLATLKYWGH 86
                     78****7..48*******8883222333336666688******************997 PP

2AP239.11.8e-12116162655
              AP2   6 VrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +r+++++grW A+I  + e g +k  +lg+f t eeAa+ ++ a+ k++g
  LPERR09G07850.1 116 IRRHHQQGRWQARIGRV-E-G-NKDLYLGTFATQEEAAEVYDVAAIKFRG 162
                      79***********9994.2.2.5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-133193No hitNo description
SuperFamilySSF541714.18E-133194IPR016177DNA-binding domain
PROSITE profilePS5103214.1043293IPR001471AP2/ERF domain
SMARTSM003807.0E-153299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-113294IPR001471AP2/ERF domain
PfamPF008471.6E-53286IPR001471AP2/ERF domain
PROSITE profilePS5103215.633111168IPR001471AP2/ERF domain
SMARTSM003802.4E-16115168IPR001471AP2/ERF domain
PfamPF008476.3E-7116162IPR001471AP2/ERF domain
CDDcd000181.38E-17118168No hitNo description
Gene3DG3DSA:3.30.730.101.3E-13118168IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-12118168IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAAIDAVGKK RGGGQQQQHR KSIDTFGQTS SQYRGVTRWT GKYEAHFWDN SFKKEGQAKK  60
GRQGGYDTEE KAARAYDLAT LKYWGHTTHI NFPLEQYQED LEFMKNMNKE QYVAHIRRHH  120
QQGRWQARIG RVEGNKDLYL GTFATQEEAA EVYDVAAIKF RGRNTVTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417124e-41AK241712.1 Oryza sativa Japonica Group cDNA, clone: J065197H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629649.12e-85PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389142e-79ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0D9XDZ51e-123A0A0D9XDZ5_9ORYZ; Uncharacterized protein
STRINGORGLA03G0326600.13e-87(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-77AP2 family protein