PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G07570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 403aa    MW: 43576.3 Da    PI: 7.0795
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G07570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-084584135
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgk 35
                     s y+GV++++++gr++A+++d  s+n    k+ k+++lg+
  LPERR09G07570.1 45 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGT 84
                     78*******************888866656446******8 PP

2AP2521.7e-16158209155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  LPERR09G07570.1 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 209
                      89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-1345125IPR016177DNA-binding domain
PfamPF008471.6E-545115IPR001471AP2/ERF domain
SMARTSM003803.8E-2146129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1146125IPR001471AP2/ERF domain
PROSITE profilePS5103217.4946123IPR001471AP2/ERF domain
PRINTSPR003671.2E-54758IPR001471AP2/ERF domain
PRINTSPR003671.2E-5105125IPR001471AP2/ERF domain
CDDcd000181.15E-22158219No hitNo description
SuperFamilySSF541717.19E-18158219IPR016177DNA-binding domain
PfamPF008471.7E-12158209IPR001471AP2/ERF domain
SMARTSM003801.7E-25159223IPR001471AP2/ERF domain
PROSITE profilePS5103218.36159217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-18159218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAKPRKISTN NTSNTTGGGA VATAAVKPKR TRKSVPRESP SQRSSVYRGV TRHRWTGRFE  60
AHLWDKNSWN ESQNKKGKQV YLGTVVAASI VVAGAYDDEE AAARAYDLAA LKYWGPDTIL  120
NFPLSAYEDE LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  180
GNKYLYLGTY ATQEEAAMAY DMAAIEYRGL NAVTNFDLSR YIKWLRPGAS DGVAGAGAAQ  240
NPHPMLGDLS AQDLPAIDLD AMASTFQHEV HGDAAVSQLI PLPARNSLGH TPTTSALSLL  300
LQSPKFKEMI ERTSAAEITN FSSSSSSSST TTSSSSPSPS PVQAAKDDGA SPQCSFPEDI  360
QTYFGCSAAE DAATGVGYTD VDGLFFGDLA AYASPAFHFE LDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116170.0AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-101AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9XDV90.0A0A0D9XDV9_9ORYZ; Uncharacterized protein
STRINGOB09G17420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-94ARIA-interacting double AP2 domain protein