PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G02550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 468aa    MW: 51647.4 Da    PI: 8.3622
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G02550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.9e-11184212533
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                      k  rr+++NReAAr+sR+RKka+i++Le 
  LPERR09G02550.1 184 KTLRRLAQNREAARKSRLRKKAYIQQLES 212
                      6789***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-5180242IPR004827Basic-leucine zipper domain
PfamPF077161.6E-8181223IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.795182224IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-8182228No hitNo description
SuperFamilySSF579592.56E-7184218No hitNo description
PROSITE patternPS000360187202IPR004827Basic-leucine zipper domain
PfamPF141442.2E-26268340IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGGSREEDHH YNHHPSELPI SFRSASPTTM IASSSMSKES SSYDMADFDQ ASLFSLYLES  60
HDQQSIQEQR QTLNIFPSQP MHIAHPTHEA KSAGVATMLP NGNQFQVLPS PNKRPDQQAG  120
QKISGSPNPS TGPNLPMPNS AKENKSSPIK ELKKCGLQKE GSSSGKGATS SDPEREGRRT  180
LDPKTLRRLA QNREAARKSR LRKKAYIQQL ESSRIRLSQL EQQVHAARVQ GAMLGTGDQH  240
QGLSGPSAAS LFDLEYGRWV EEHSKLIFQL RAALNEQMPD NQLQVFVSGA IAQHEELLSL  300
KGAIARADIF HLLCGVWASP AERCFLWLGG FRPSEAIKVM LKQVEALSEA QLMSIYELQQ  360
SAKGTEDALS HAMDALQQSL SDAVAAPDVA GGGFMGHMSL AMTKISTMED IVRQADGLRQ  420
QTLHKLQHML TIRQAARCFV SISDYFHRLR ALSTLWVARP RHEDGPAM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G02550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069880.0AK106988.1 Oryza sativa Japonica Group cDNA clone:002-120-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651202.10.0transcription factor TGAL7 isoform X1
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA0A0D9XBZ80.0A0A0D9XBZ8_9ORYZ; Uncharacterized protein
STRINGLPERR09G02550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-117bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]