PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G00550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 400aa    MW: 43880.4 Da    PI: 10.3753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G00550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036295317123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C+ C+ksF++   L  H ++H
  LPERR09G00550.1 295 YICSECKKSFPSGQALGGHVKSH 317
                      89**************9999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.9E-6293322No hitNo description
PfamPF139122.6E-11295318IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.614295322IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAPFWISSLE SERPVGSYHS NVSAQPPRIQ AERGKRHTVI GGHGQGGIAR WRRRSMPLAL  60
RPYSAVEHSR GRVDGSGRQD PSKSISSTVV LPTGMGIWRS VVGQDRWNVI DGGQFVDQPL  120
APSAVKAVLP EEQIFNSAAV AQGQQAHGYE KRAFLPYLTT TMAMQRAPGE ISSGKFGNKE  180
HEEHNNHTVL PSWTPTGHHG SSNSTECVEK LLVPGKLAQR EDFVIGTHKQ ASMTVAAPPP  240
NISEITGYFS ARKNCEMMEP KGLQHSVDFS FAKESRMIEF RSLDSSVRQN MRGPYICSEC  300
KKSFPSGQAL GGHVKSHNSR KRTPAQRDDG RPTGWVASTS LTLVSPNSIA MNGSSNPRTM  360
SVPNQKREVL AAAHINNIRR GSFRLFGNNI VEAPKEEPME
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G00550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611340.11e-101uncharacterized protein LOC4346425
TrEMBLA0A0D9XBA10.0A0A0D9XBA1_9ORYZ; Uncharacterized protein
STRINGLPERR09G00550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162161213