PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G00310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 380aa    MW: 42622.7 Da    PI: 10.5716
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G00310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.84.5e-11179266497
           DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis..fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +r w+ +Dei++L +l+    +  + p++  + f++ + ++++   +++++++ eK+r+LK++f +             +k+h+ + ++ls+++
  LPERR09G00310.1 179 RRRWNAHDEIMILEALVHHIRNGQMLPQQPGHPFFHAIAQRLQgtTTFNHNDVREKLRSLKRRFDNAAIP--------PTKDHELHLYQLSSQL 264
                      789****************999999***************998446799***************998776........6788888899999988 PP

           DUF573  96 Wg 97 
                      W 
  LPERR09G00310.1 265 WA 266
                      85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-13179265IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MASKRVRSSP SDGHARSASS GGGEPPPQID NVAVAAQSPT SALAEEEGVA AESEEEAAGD  60
GAEPDNSRRV TALPSKEAPV QEDPKPASKS NKKNMMMMKK KRPLRAAQSQ LEVLPPKSKK  120
KKTKAVLQPA ARGKAKKKQH DDIAETPSLR KSQRLAAASS GNTSPPHPNK KKKEITALRR  180
RWNAHDEIMI LEALVHHIRN GQMLPQQPGH PFFHAIAQRL QGTTTFNHND VREKLRSLKR  240
RFDNAAIPPT KDHELHLYQL SSQLWAPHAM DKQSKPLATH QQRSFATDDH KSCAMDDHEE  300
RSFDDMCSQF PQLAKEINVL AEDLPAVRKS FARLDSKQAV AIETKLEKLR WFDMKMQYKV  360
KVKMAKIRKE LLHHLMELRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199121KKRPLRAAQSQLEVLPPKSKKKK
2130138ARGKAKKKQ
3132138GKAKKKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644071.12e-63basic salivary proline-rich protein 2
TrEMBLA0A0D9XB690.0A0A0D9XB69_9ORYZ; Uncharacterized protein
STRINGBGIOSGA001541-PA7e-63(Oryza sativa Indica Group)
STRINGLOC_Os01g32890.13e-63(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17455910