PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G20530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 215aa    MW: 23433.3 Da    PI: 6.1312
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G20530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.52.2e-3871071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +k+l +lp ++r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a+
  LPERR08G20530.1   7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNASKILMHLPASDRCEAAVTMSYEAQARLRDPIYGCVSHIFSLQQQVVSLQAQ 100
                      7*************************89****************************************************************** PP

           DUF260  94 lallkee 100
                      l++lk++
  LPERR08G20530.1 101 LESLKAQ 107
                      **99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9136108IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-367105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTGLGSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KILMHLPASD  60
RCEAAVTMSY EAQARLRDPI YGCVSHIFSL QQQVVSLQAQ LESLKAQATQ GYGDGCSISS  120
PQKDSSGNMF TPILQDEQFF LSPTMASNSS VKNENKLYFG NDHFDPTPAQ SSQGLEAELW  180
MSDYSNINPC CSVQGNGYHD MEDLQSVAFA YLNQA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-112CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149641e-112AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0045871e-112AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648252.11e-140PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J72e-64LBD29_ARATH; LOB domain-containing protein 29
SwissprotQ9SLB64e-64LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A0D9XAZ21e-162A0A0D9XAZ2_9ORYZ; Uncharacterized protein
STRINGBGIOSGA026473-PA1e-139(Oryza sativa Indica Group)
STRINGLOC_Os08g44940.11e-139(Oryza sativa Japonica Group)
STRINGORGLA08G0192400.11e-139(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-54lateral organ boundaries-domain 29