PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G19160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 354aa    MW: 37275.5 Da    PI: 5.3843
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G19160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.7e-3760157692
              TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........... 88 
                       r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ +    ++ss+           
  LPERR08G19160.1  60 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSssgpatsavvd 152
                      6999********************************************************77777444.2222222222222211222222333 PP

              TCP  89 .kaak 92 
                       ++++
  LPERR08G19160.1 153 gDESP 157
                      31111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.38162116IPR017887Transcription factor TCP subgroup
PfamPF036342.7E-3062152IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEAQAQEDKA EAAEEETTTR HHAPPAAVAM SAIPMNSWLV PKPEPVEFFG GMAVVRKPPP  60
RNRDRHTKVE GRGRRIRMPA ACAARIFQLT RELGHKSDGE TIRWLLQQSE PAIIAATGTG  120
TVPAIATTVD GVLRIPTQSS SSSGPATSAV VDGDESPAKR RRKLQPTRAV AGASPLATAA  180
PAAAYYPVIA DPLLQGSGGA AISVQSGLAP ITATGAPQGL VPVFAMPATG TPAVAGSNRM  240
IPQATAVWMV PQPGGAAGAA NQPTQFWAIQ SAPQLVNFAG AQFPTAINVA DFQQQQQQPV  300
SIVQNSNSGG EHHHMQFSGA DSHEQQRRRK EADHPEEDED DDDDEPVSDS SPEE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G19160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648330.10.0transcription factor PCF2
SwissprotA2YXQ10.0PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH60.0PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A0D9XAF70.0A0A0D9XAF7_9ORYZ; Uncharacterized protein
STRINGLPERR08G19160.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-46TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]