PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G12560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 440aa    MW: 45451.7 Da    PI: 8.8171
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G12560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-32245298255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  LPERR08G12560.1 245 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 298
                      9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-15242299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28243299IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23245298IPR006447Myb domain, plants
PfamPF002496.5E-7246297IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MASSATSSAP PPDLSLHISL PSAGGAGAGA GAAVVESSTA APPAIGRGVK TAVAAVGIDP  60
WRRLDGSTAS TELSLSMSTP PPQQQQDVLP WRLRQQPSTT APTPASVPVT LPTLPMDGTA  120
STRPIRGVPI YGGGGHPFLA GGGGAKAMGL YNNPYHSTAW PSSTSPAPLP PDVVNTTSSA  180
SLLSPSAYHR MLSSTGRLHG VLADTLRGYG AGAAAAMGGG YGGVASSGRF MPRLLPASRR  240
SMRAPRMRWT SSLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK  300
STDKPAAASG PMDGSGSGDD ELPATGGRQA TSSGAEVDRR FSFTEHRSSS EGAVSHAGGG  360
GDGDCSSSAI NSDTIRARSN SPRDLWLSSS SVCNMDTQRL VTVEDIEPCR SSSLQVSGHE  420
LNPSLEFTLG RPSWHSRDHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16246300357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16246300357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16246300357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16246300357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G12560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877880.0AK287788.1 Oryza sativa Japonica Group cDNA, clone: J065172N06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648273.11e-161probable transcription factor RL9
SwissprotQ0J2352e-99ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A0D9X8040.0A0A0D9X804_9ORYZ; Uncharacterized protein
STRINGLPERR08G12560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-33G2-like family protein