PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G04630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 412aa    MW: 42383.6 Da    PI: 6.8337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G04630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000283013381254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ ++   L++l+ +      +K + a++L +++eYIk L
  LPERR08G04630.1 301 RKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 338
                      5566666777788888776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.96289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0023295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-4298342No hitNo description
SuperFamilySSF474592.22E-11298358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-8299360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MADHQEMIHA ASPGSHGGDW WSAAAPPSCS APETMAGFGG WSSAAVIDGG GNASRSAAAG  60
NTTAESPGSN SLATGSSITF QEPAAGGGVA DPAAVHAQTV AGGGWNQQQT FLDGSGFHGY  120
MSSRTDHHAH HQMLNNTPSL MSHSSSNNSG VMLQDHHHHD QNYQFLSNLG FELLSSPTSP  180
YGGGGGGGFR SSLLRSLTEP AAAAAARPGS PGSLIQQYHY HQPPAMSLQP PAAGREPLQF  240
TNSTAPFWNP STGFAVAAEG TALGGAGASS AQPTTARLAA KSALEGVGDS SSIITKKAKV  300
RKEKLGDRVT ALQQLVSPFG KTDTASVLHE TIEYIKFLHD QVGALSAPYL KNRQQVPHLK  360
SSGDNDGGGG EATASKRDLT GRGLCLVPIS STFAVASETP VDFWTPFGAT FR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G04630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612837e-51BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0D9X5040.0A0A0D9X504_9ORYZ; Uncharacterized protein
STRINGLPERR08G04630.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-37bHLH family protein