PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G20790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 621aa    MW: 67692.3 Da    PI: 4.211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G20790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078111129220
                      EETTTTEEESSHHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                      kC  Cg++Fs++s+L  H+
  LPERR07G20790.1 111 KCWSCGQVFSSNSELCGHL 129
                      7***************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-3127173No hitNo description
PfamPF127566.3E-656131IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805677IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.1506.6E-38254414IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profilePS5167870.098254583IPR025799Protein arginine N-methyltransferase
SuperFamilySSF533351.63E-61260568IPR029063S-adenosyl-L-methionine-dependent methyltransferase
CDDcd024401.85E-11295414No hitNo description
PfamPF136492.9E-11296411No hitNo description
Gene3DG3DSA:2.70.160.114.0E-40418602No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006479Biological Processprotein methylation
GO:0005829Cellular Componentcytosol
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MATPESELPT KQELLGEEYE EDEDEEDGEE GWDDWESDGD DAAGGGGGGG GGGLLCLFCS  60
ERFGSESSLF SHCASEHKFD FYGVVKETTG MDFYGCIKFI NFVRSKVAEN KCWSCGQVFS  120
SNSELCGHLH ASEIPQPEGK VPWGDDLYLK PFMEDDSLLH SLSIFDDDDE EESCGMPVER  180
GECSTGNGTL AETCESNLKS IIDDDSDVVG KFEKACTVES KDGECSGSLA QDPSDKQLKI  240
ARASAAARGI KSVDDSYFGS YSSFGIHREM LGDKVRTEAY RDALLCNPSL MNGATVLDVG  300
CGTGILSLFA AKAGASRVIA VDGSAKMVSV ATQVAKNNGF LYDENMEMEQ KRDTQVISVV  360
HTKAEELNHK IQVPSNRFDV LVSEWMGYCL LYESMLSSVL YARDHFLKPG GAILPDTATI  420
FGAGFGKGGT SLPFWENVYD FDMSCIGKEV TGNSAKFPVV DILASEDIVT ETAVLHSFDL  480
ATMKENEMDF TSSFELRLSE SGSSQSGVTW CYGIVLWFDT GFTSRFCKER PVNLTTSPFS  540
TPTHWSQTIF TFEEPIAMTK EGCVVGSSES VGTDDCPAVM IRSRISIVRA SEHRSIDISI  600
ETTGISSDGR KRSWPVQIFN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6nt2_A3e-6325555851325Protein arginine N-methyltransferase 1
6nt2_B3e-6325555851325Protein arginine N-methyltransferase 1
6nt2_C3e-6325555851325Protein arginine N-methyltransferase 1
6nt2_D3e-6325555851325Protein arginine N-methyltransferase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMethylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G20790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1054890.0AK105489.1 Oryza sativa Japonica Group cDNA clone:001-127-B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658026.10.0PREDICTED: probable protein arginine N-methyltransferase 3
RefseqXP_015647334.10.0probable protein arginine N-methyltransferase 3
SwissprotA3BMN90.0ANM3_ORYSJ; Probable protein arginine N-methyltransferase 3
TrEMBLA0A0D9X2160.0A0A0D9X216_9ORYZ; Uncharacterized protein
STRINGLPERR07G20790.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP789599
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]