PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G20450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 373aa    MW: 40115.2 Da    PI: 5.8293
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G20450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.41e-3362161297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ ++f+++h+q ife+
  LPERR07G20450.1  62 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGNAFAFRSPHEQAIFEI 155
                      79************************99877778***************************************8889***************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  LPERR07G20450.1 156 ARNIWR 161
                      *****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-3063160IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSFPDADADD ESEDGGDFID PSFPNLTSSS AAAAAVAPAA AGSGGGGVGS SSGGGGGERR  60
PLFQRLWTEE DEIVILRGFA EFTAARGTAF ASHQYDTDPF YEDMRGRLQL GFSKSQLVEK  120
LRRLKRKYRN CVSRLRGSGN AFAFRSPHEQ AIFEIARNIW RPANKHGRDG DSDDEDAAAP  180
VATAAVAVAP AAVPVVSTSP NGEVKSPTSG RQRRRRRAVA DFAATASPAT TPVTNMVQPL  240
QPLQVPVSVP VKMDDTLPAL SQSQSQSTMP ITVTMERSEP LGLPVMAPQS AVLDAEKSFL  300
TPLFKEMVRA VINIGSNPFG VQLPEPPHGL TMEGEKWRKQ RILELEVYLK RIELLQDQVK  360
ATLEELKSSA PGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-154CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankAP0149631e-154AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0037491e-154AP003749.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1136_D11.
GenBankAK0683561e-154AK068356.1 Oryza sativa Japonica Group cDNA clone:J013146D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.11e-168PREDICTED: uncharacterized protein LOC4344030
TrEMBLA0A0D9X1X60.0A0A0D9X1X6_9ORYZ; Uncharacterized protein
STRINGSb02g040550.11e-163(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.29e-34DNA-binding storekeeper protein-related transcriptional regulator