PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G18260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 328aa    MW: 34923.6 Da    PI: 7.3081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G18260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-056081323
                     ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                     C+ Cgk Fs++  L  H r+ H
  LPERR07G18260.1 60 CGVCGKLFSSWRKLFGHVRRrH 81
                     *******************999 PP

2zf-C2H214.97.8e-05215237123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp Cgk+F +   L  H  +H
  LPERR07G18260.1 215 YECPGCGKVFASYQALGGHRASH 237
                      99**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.315881IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0585886IPR007087Zinc finger, C2H2
PfamPF139120.15883IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-75981No hitNo description
PROSITE patternPS0002806081IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-7210237No hitNo description
PfamPF139121.7E-11214239IPR007087Zinc finger, C2H2
SMARTSM003550.05215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45215242IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAAAEEDDDE VRRLSNGGGV VGYGLRENPK KTRRLSDFAG GDGEEEERGD GGGGGEVRAC  60
GVCGKLFSSW RKLFGHVRRR HESAGEEEAD AAAVTVITPP PRRRRRSMRV AAPPPAPPPP  120
PTTTVEDVAL GLLMLSRDTG LWRSPPSYGH NSDEDSPLPH HAGDVTVTKS RRRRTASYNY  180
YAPPPPNPST SPSPKRRQQR AAATAAAPAA KRTRYECPGC GKVFASYQAL GGHRASHKRI  240
NTSCSAPKLS THSPDSVVAA AGIGGDEDDS KANKSSPAEE EKFEFDGELY AEMEMEQHHS  300
PATAAALVAG FLDLNYPPAA TASSSEVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G18260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646241.15e-75uncharacterized protein LOC107278250
TrEMBLA0A0D9X1440.0A0A0D9X144_9ORYZ; Uncharacterized protein
STRINGLPERR07G18260.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-09C2H2-like zinc finger protein