PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 63aa    MW: 6757.88 Da    PI: 8.5162
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26050.55.8e-16260154
           DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer 54
                     +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r
  LPERR07G17890.1  2 SCNGCRVLRKGCSEGCVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQR 60
                     6*********************9999888899***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.8163IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-13261IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIEGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR  60
AGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126156e-87CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankAP0149636e-87AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0051496e-87AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647207.12e-37PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN115e-34LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SZE84e-34LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0D9X1062e-40A0A0D9X106_9ORYZ; Uncharacterized protein
STRINGLOC_Os07g40000.15e-37(Oryza sativa Japonica Group)
STRINGORGLA07G0157700.15e-37(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-35LOB domain-containing protein 39