PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G06910.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 383aa    MW: 41411.9 Da    PI: 6.9504
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G06910.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.72.5e-07121142122
              AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                      s+y+GV++++++grW+++I+ +
  LPERR07G06910.2 121 SQYRGVTFYRRTGRWESHIWAY 142
                      78*****************984 PP

2AP242.71.4e-13194244155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  LPERR07G06910.2 194 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 244
                      89********.7******...5...334336**********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-5121160IPR016177DNA-binding domain
SMARTSM003809.5E-7122165IPR001471AP2/ERF domain
PfamPF008473.3E-9194244IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-17194253IPR016177DNA-binding domain
CDDcd000187.79E-26194254No hitNo description
PROSITE profilePS5103216.107195252IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-16195252IPR001471AP2/ERF domain
SMARTSM003804.2E-33195258IPR001471AP2/ERF domain
PRINTSPR003671.4E-6196207IPR001471AP2/ERF domain
PRINTSPR003671.4E-6234254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVLDLNVESP ATSSSSTPPE GGGGGGGGGF RFDLLGGSPD EDGCSPPVMT RQLFPSPYAA  60
VVAAAAAVGD GSPPRHTPAA GGEGSWQRRA ADLGVAQGQR SPAGAAGGGK KSRRGPRSRS  120
SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLDADINFNL NDYEDDLKQM RNWTKEEFVH  180
ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEIE AARAYDRAAI  240
RFNGREAVTN FDPSSYDGDV LPETDNDAVV DGDIIDLNLR ISQPNVHDLK SDGTLTGFQL  300
NCDSPEASSS VVTQEVPMEK RPELVPQSFP TWSWQIQGSP LPLLPTAASS GFSTGTVADA  360
ACVPSSRPHP FQGHHQFYFP PTA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3746630.0DQ374663.1 Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds.
GenBankCT8319750.0CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence.
GenBankAK1118740.0AK111874.1 Oryza sativa Japonica Group cDNA clone:J033046C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647892.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotP479273e-77AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0D9WX160.0A0A0D9WX16_9ORYZ; Uncharacterized protein
STRINGLOC_Os07g13170.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-78related to AP2.7