PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G23280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 324aa    MW: 35069.9 Da    PI: 4.5556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G23280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11162204754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  LPERR06G23280.1 162 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 204
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.80E-5148209No hitNo description
PROSITE profilePS5088815.269155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-16159227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15162222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9162204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.84E-4255283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAAAAAA AMDGSFQERH QPTTVSVLPT  60
FTASYDQAPP PAAATGFDCL SEVYGNAAAA FVPNAGAGGD YGGDMGFLDV VEPKANMVVD  120
GGIGVCKVEP GLADGGGGGF VPAAAPASKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS  180
VVPKISKMDR TSILGDTIDY MKELLERIRQ LQEEIEEQQQ ETPGVLSVFR ELNPNEMLAR  240
NTPKFDVERK EGGDTRVEIY CAAKPGLLLS TVSTLETLGL DIQQCVVSCF NDFGMHASCS  300
EVASSFSFIM LLFFMSKPNN LGAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149169KKRVEGMPSKNLMAERRRRKR
2163170ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G23280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693904.11e-157PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL13e-61BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D9WU930.0A0A0D9WU93_9ORYZ; Uncharacterized protein
STRINGLPERR06G23280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-41beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]