PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G12320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 254aa    MW: 27816.6 Da    PI: 10.0955
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G12320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57335.62.6e-1154150297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd.dida.fyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +fqr w   Dei+lL ++++ ++++g  ps  d+ a +   +   +  +   + ++ ++r L+ ++   +++  s + ++  k+hd  i++lsk
  LPERR06G12320.1  54 AFQRTWAPADEISLLEAVVSHRQRHGRIPSPdDLAAaLRGSLLTTYGRRLDADAVSLRLRYLRSRYIAAWRR-ISFRGVVPVKDHDLRIYKLSK 146
                      69*************************77774655415567888889999999*******************.5566678899*********** PP

           DUF573  94 kiWg 97 
                      +iW+
  LPERR06G12320.1 147 SIWE 150
                      ***8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-1555150IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSGVRRQPPP PPSLDIGEEG AAATDDEGSD SYSDGSFSSG SGSAGGGATK KPAAFQRTWA  60
PADEISLLEA VVSHRQRHGR IPSPDDLAAA LRGSLLTTYG RRLDADAVSL RLRYLRSRYI  120
AAWRRISFRG VVPVKDHDLR IYKLSKSIWE EATRDQRISK KPSVARNGPP REPRELEALY  180
PCLSAVVDAV EASRPCAVVG MLRRSFGRIG DEKAAQLEAK ARKQRLAEVK VGIRLAMLRK  240
EVSDTLLELI ESND
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G12320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641435.18e-74uncharacterized protein LOC4341103
TrEMBLA0A0D9WQ810.0A0A0D9WQ81_9ORYZ; Uncharacterized protein
STRINGLPERR06G12320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1402355