PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G09130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 479aa    MW: 53466 Da    PI: 5.9582
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G09130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.41.4e-321232621128
              NAM   1 lppGfrFhPtdeelvveyLkk..kvegkkleleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgy 82 
                      lp+G++F+Ptd el+++ L+k  kv++k++++ +  i++v+    i++++P++Lp  vk++ +  +fF+++ k+y+tg rk+r+++     + +
  LPERR06G09130.1 123 LPRGVKFDPTDPELLWHLLAKhgKVNAKPHPFIDEfIPTVEeddgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGIRKRRKINtsdlaDVR 215
                      799**************9988335777775553322544422345**********.677888899******************75444555889 PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      W++tgk+k+v++ +g++ g+kk++v+y    +  k+ekt+Wvmh+y+l
  LPERR06G09130.1 216 WHKTGKTKPVIV-DGKHLGCKKIMVLYmsPVKGGKPEKTNWVMHQYHL 262
                      ************.999***********5523666667*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-37108281IPR003441NAC domain
PROSITE profilePS5100530.093123281IPR003441NAC domain
PfamPF023658.1E-14124262IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSRLLALAES RSRVNSGSKK KKSDQPLLHF HPLQVGAAAL VAIAVAGTLV GRELSVRRRG  60
RGDAAMTGTS WIVDSQRIAS KIKNASGLVD ASKHNWVSNP TKACPRCNHV IDNSDVVHQW  120
PGLPRGVKFD PTDPELLWHL LAKHGKVNAK PHPFIDEFIP TVEEDDGICY THPQKLPGVK  180
QDGSVSHFFH RTFKAYNTGI RKRRKINTSD LADVRWHKTG KTKPVIVDGK HLGCKKIMVL  240
YMSPVKGGKP EKTNWVMHQY HLGTGEDEIE GQYVVSKLFF QQQFKPGEKN AQELTSDVSE  300
SIVAEDRLDF PPLPLEEHVC TNQEVLEKSE PSSDQGKETS EINNKDTVVE DDVHMSTEKP  360
EDGDNPSSQD PKWWEGESQF LLDSQQLAEN LAICDEFLQS QSQTSCGGED EPDKIKPRLA  420
VYAQLPVEDL KKDLEECQKL DPSDSANLEL ENTCEFRLSQ IEFSQDSFTT GWAGGKAID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604340.0AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640881.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-140NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A0D9WP450.0A0A0D9WP45_9ORYZ; Uncharacterized protein
STRINGORGLA06G0096700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-141NAC family protein