PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G09070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 458aa    MW: 49691.1 Da    PI: 7.3918
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G09070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83e-10171212445
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                       k +rr+++NReAAr+sR RKka+i++Le    +L +  ++L
  LPERR06G09070.1 171 QKTQRRLEQNREAARKSRMRKKAYIQQLESSRSKLANLEQEL 212
                      589**************************9888887776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-8168266IPR004827Basic-leucine zipper domain
PfamPF077169.4E-8170214IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.864170214IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.31E-8172215No hitNo description
CDDcd147082.19E-21172224No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-9172216No hitNo description
PROSITE patternPS000360175190IPR004827Basic-leucine zipper domain
PfamPF141441.0E-28256332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MHHHSSHVFR AEEQSGGGTA GYNHIGDGAI FLPPLLHPDL PLLRTSPNPI SKSSSSLTAG  60
NNFPPPLAGG NQHGVVVGMA AAPGMATATA TDRFCLPRMA AAAAAASQLE NWGDSGVVVS  120
STFTDDTSTD VDDTADKHHH HALMGGGGGG CRGELRGAIF SAVSKEKTGD QKTQRRLEQN  180
REAARKSRMR KKAYIQQLES SRSKLANLEQ ELQRARQQGI FITTGGSGDH GQSIGGNGTL  240
AFDMEYARWL DDHQRHINDL RVAMNAPIGD DDLRVLVDGV MAHYDHVFRL KGLATKIDVF  300
HVLSGMWLSP AERFFMWLGG FRSSELLKVL ASHLEPLTDQ QLMGICNLQQ SSQQAEDALS  360
QGMEALQQTL ADTLASAAAA AGGVDNVTNY MGHMAVAMAK LTTLENFLRQ ADLLRQQTLQ  420
QMHRILTTRQ AARALLVISD YFSRLRALSS LWLARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G09070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642106.20.0transcription factor TGAL3-like isoform X3
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0D9WP390.0A0A0D9WP39_9ORYZ; Uncharacterized protein
STRINGLPERR06G09070.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-110bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]