PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 190aa    MW: 20675.7 Da    PI: 4.5296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-151261255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr +  +g+W+AeIr p++   r+r++lg+++ +e+Aa+a +aa  +l+g
  LPERR06G05750.1 12 RYKGVRLRQ-WGKWAAEIRLPNS---RRRIWLGSYDAPEKAARAFDAAFVCLRG 61
                     7*****998.**********933...5*********************988886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6141271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-261273IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-181273IPR016177DNA-binding domain
SMARTSM003809.5E-301277IPR001471AP2/ERF domain
PfamPF008476.7E-91255IPR001471AP2/ERF domain
CDDcd000185.75E-231273No hitNo description
PRINTSPR003672.3E-81324IPR001471AP2/ERF domain
PRINTSPR003672.3E-83551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MASGGAAEAE RRYKGVRLRQ WGKWAAEIRL PNSRRRIWLG SYDAPEKAAR AFDAAFVCLR  60
GVEAKSGLNF PDSPPDVART GDLREVYAAA VSHANRPPAA APVAAEEQHD VVRGNRPPAP  120
LQVEGGSFDW SQFRENPPPI YSPTATAIAG NDAYEQAAMW TTTAARVEES IGDDDDDEGS  180
ECQDLWSFDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G05750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126142e-61CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.11e-59ethylene-responsive transcription factor ERF018-like
TrEMBLA0A0D9WMX91e-135A0A0D9WMX9_9ORYZ; Uncharacterized protein
STRINGLPERR06G05750.11e-135(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-32ERF family protein