PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G01410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 612aa    MW: 65335.9 Da    PI: 6.2136
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G01410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.84.2e-1072115901374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 
                      lv++L++cAe +++g++ +a+ +Larl e+asp+g +pm+R+aayfteALa r++r++++l++  pp++ ++      ++ ++al++++ ++Pi
  LPERR06G01410.1 211 LVRALTACAESLAAGNHDAANYYLARLGETASPAGpTPMHRVAAYFTEALAIRVVRTWPHLFDVTPPRHLTDIVadgGEDDATALRILNAITPI 304
                      6899****************************************************************99976678899999************ PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnvlva 183
                      ++f h+t N+ +l+a++g++rvH+iDfdi+qG+QWp +lq+LasR+ +p ++RiTgvg+    s++el+etg rLa++A+++g+  fef++ v+
  LPERR06G01410.1 305 PRFIHFTLNERLLRAFDGHDRVHVIDFDIKQGIQWPGFLQSLASRDPPPSHVRITGVGE----SRQELNETGARLARVAAAVGLaAFEFHA-VV 393
                      ***********************************************************....9*******************945*****.7* PP

             GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklp 276
                      +rled++l++L+vk+gE +aVn vl+ hrll+ +  +  +  ++L l +s+ + ++ + e+e d  ++++ +rf+ a++ y+a+fd++ +a++ 
  LPERR06G01410.1 394 DRLEDVRLWMLHVKRGERVAVNAVLAAHRLLRYD--TGAALADFLALTRSTGAAILLLGEHEGDD-GGRWEARFAAAMRRYAAVFDAVgAAGME 484
                      *******************************544..4445599********************98.789*******************999*** PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerlee....aGFkpvplsekaakqaklllrkvksdg...yrve..eesgslvlg 361
                      + s +r+k E++ ++rei+n+va  ga+r+erhe++++Wr+rle+     GF+++ ++e++a+q +++ r++++ g   y ve   + + l+l 
  LPERR06G01410.1 485 AGSPARVKAEEM-FAREIRNAVAFDGADRFERHESFGSWRRRLEDgaggGGFRNAGIGEREAMQGRMIARMFGGGGhgkYGVEtiGDGEGLTLR 577
                      ************.******************************98655569*********************96555689999656788999** PP

             GRAS 362 WkdrpLvsvSaWr 374
                      W d+pL++vSaW+
  LPERR06G01410.1 578 WLDQPLYTVSAWT 590
                      ************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.695185565IPR005202Transcription factor GRAS
PfamPF035141.5E-104211590IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MLAGCSFSSR HQMSTAQRFD ILPCGFSKRG ARSDGGAAAA AATAGDARSC SFRTHPAPAV  60
TQAVTWERTR AVKRAHDEDD VEEYGPIVRA KRTRMVGAGD EVWFNQSIAG TIQSTTMMMA  120
AGEGEEASSA AAEEEEEEKV FLVPSAAAFP HSAAAGTSLA AAKKEEYSKS PSNDSSSSSS  180
DGNSSAAMMT IPPARRNGGV AQAVEQEAFE LVRALTACAE SLAAGNHDAA NYYLARLGET  240
ASPAGPTPMH RVAAYFTEAL AIRVVRTWPH LFDVTPPRHL TDIVADGGED DATALRILNA  300
ITPIPRFIHF TLNERLLRAF DGHDRVHVID FDIKQGIQWP GFLQSLASRD PPPSHVRITG  360
VGESRQELNE TGARLARVAA AVGLAAFEFH AVVDRLEDVR LWMLHVKRGE RVAVNAVLAA  420
HRLLRYDTGA ALADFLALTR STGAAILLLG EHEGDDGGRW EARFAAAMRR YAAVFDAVGA  480
AGMEAGSPAR VKAEEMFARE IRNAVAFDGA DRFERHESFG SWRRRLEDGA GGGGFRNAGI  540
GEREAMQGRM IARMFGGGGH GKYGVETIGD GEGLTLRWLD QPLYTVSAWT PASDDGGGAV  600
SASTTASHSQ QS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5921859326382Protein SCARECROW
5b3h_A3e-5921859325381Protein SCARECROW
5b3h_D3e-5921859325381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G01410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812393.10.0protein DWARF AND LOW-TILLERING
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A0D9WLA20.0A0A0D9WLA2_9ORYZ; Uncharacterized protein
STRINGLPERR06G01410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-115GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]