PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G20600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family RAV
Protein Properties Length: 387aa    MW: 41216.4 Da    PI: 10.2997
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G20600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.7e-1371119155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++aa+++++g
  LPERR05G20600.1  71 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 119
                      78****9888.8*********......44**********99*************98 PP

2B3924.2e-29203305185
                      EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+k+ tpsdv+k++rlv+pk++ae+h                  gg + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL +
  LPERR05G20600.1 203 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqispatiagvsggggGGGECKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHA 296
                      89***************************9999999999999886666799******************************************* PP

                      T-EEEEEE- CS
               B3  77 gDfvvFkld 85 
                      gD v F+++
  LPERR05G20600.1 297 GDAVGFYRS 305
                      ******954 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.74E-1271127No hitNo description
PfamPF008471.6E-871119IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1671127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-1972127IPR001471AP2/ERF domain
SMARTSM003804.0E-2572133IPR001471AP2/ERF domain
PROSITE profilePS5103219.74472127IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.7E-38197327IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-27201305No hitNo description
SuperFamilySSF1019362.09E-27201305IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-19203313IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956203324IPR003340B3 DNA binding domain
PfamPF023624.5E-26203305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDSTSCLLDD ASSGASTAKK SSPAATSSKP LHRVGSGGGS SAVMDAAEPG AEADSGGERR  60
AAAAGNKLPS SRYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR  120
DAVTNFRPLA ESDPDAAVEL RFLASRTKAE VVDMLRKHTY PDELSQFRRA FAAISPRPSP  180
PSPSPASNTL LSGSTAAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQISPATIAG  240
VSGGGGGGGE CKGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV  300
GFYRSAAAAA GKQAQLFIDC KLRRQKQQFP AAVKAIRLFG VDLLTAAAAS PEKHAGGKRG  360
MEAIAESQSK SQSHVVFKKQ CIELALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4620032311117DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G20600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H40.0Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A0D9WJD80.0A0A0D9WJD8_9ORYZ; Uncharacterized protein
STRINGLPERR05G20600.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-102related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]