PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G17480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 242aa    MW: 24475.7 Da    PI: 9.5892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G17480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-203787256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  LPERR05G17480.1 37 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 87
                     69*******.**********83...36**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-173695No hitNo description
SuperFamilySSF541711.31E-223795IPR016177DNA-binding domain
PROSITE profilePS5103223.8683794IPR001471AP2/ERF domain
SMARTSM003808.6E-3637100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-323794IPR001471AP2/ERF domain
PfamPF008471.5E-133786IPR001471AP2/ERF domain
PRINTSPR003675.0E-113849IPR001471AP2/ERF domain
PRINTSPR003675.0E-116076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAPRTSDKTM SPAATGLSLG VGGGVSGAGS AAGTGQHFRG VRKRPWGRYA AEIRDPAKKS  60
RVWLGTFDTA EEAARAYDAA AREYRGAKAK TNFPYPTAAV ATGVTGGSGS SNSSTVASFG  120
GDVQAPMKAM PIPPSLELDL FHRAAAAAAA GGVGVGGMRF PFEGYPVSHP YYFFGQAAAA  180
AAAASGCRML KMAPPVTVAA VAQSDSDSSS IVDLAPSPAA AMSAKKAIAF DLDLNCPPPM  240
EV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-223594363ATERF1
3gcc_A4e-223594363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G17480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085230.0AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK1117550.0AK111755.1 Oryza sativa Japonica Group cDNA clone:J023061G02, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8324820.0CT832482.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA010C22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637538.13e-95ethylene-responsive transcription factor 4
TrEMBLA0A0D9WI741e-171A0A0D9WI74_9ORYZ; Uncharacterized protein
STRINGLPERR05G17480.11e-172(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-21erf domain protein 9