PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G14460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 384aa    MW: 42250.2 Da    PI: 6.4473
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G14460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.8e-06212231120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k F+r  n++ H+
  LPERR05G14460.1 212 FVCHVCNKAFNRYNNMQMHM 231
                      89*****************9 PP

2zf-C2H213.50.00022299321123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C  Cgk+F  k + ++H +++
  LPERR05G14460.1 299 FACRRCGKPFAVKGDWRTHEKNC 321
                      78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-5208235No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5212231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
SuperFamilySSF576678.67E-6283319No hitNo description
Gene3DG3DSA:3.30.160.608.5E-5286319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVLSACTMVE NSGYRGGGSV PFFEWLKPRS SPPPPSPSTT SSYSTTSSSS LTAPSREEGQ  60
QLGGGDGTML CLPLLGRLGE EPVADDGGKM NNNSFKEEVS NTTDVDAGVD LNIALPAASG  120
GCSSEDTPMD EDEDEDDDED EEEDMEEKVE VGHDQKFKVE ERDQVVHSEG LNYVATVEDR  180
SKAGDVVADA GCHGRRYWIP TPAQILIGPV QFVCHVCNKA FNRYNNMQMH MWGHGREYRK  240
GPESLKGTQA STALAMLKLP CYCCAAGCRN NVSHPRARPL KDFRTLQTHY KRKHGAKPFA  300
CRRCGKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH FPVAAPPTTK  360
QQQQQRIICF DEHSTAAAMH VMAD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G14460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640742.11e-167protein TRANSPARENT TESTA 1 isoform X1
SwissprotQ8W0304e-96ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A0D9WH320.0A0A0D9WH32_9ORYZ; Uncharacterized protein
STRINGLPERR05G14460.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.14e-96WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]