PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G08090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 321aa    MW: 35617.8 Da    PI: 7.8466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G08090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-056587123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ Cg+ F++   L  H+++H
  LPERR05G08090.1 65 YSCSFCGREFRSAQALGGHMNVH 87
                     99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-66291No hitNo description
Gene3DG3DSA:3.30.160.602.7E-46389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.4E-66588IPR007087Zinc finger, C2H2
SMARTSM003550.0026587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.2176592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDPARYWMLA RRKLQLGDQK APRFPNPHIT VGGSSASYYE SWEERAFAED SAGHLGGCIW  60
PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLSGAT AEDGAGREEN SHRMPPHQSY  120
MIQPCPPQIG ALQHAYGPNP SSAPLIAAET NPNSMCGVVA YPARSLLTSS RIAWGKQVLS  180
APLTSPKSPS AGRENGKREM MFPVAVRLAQ DNERSANRVS SNLDLRFGEN ELRMSALGCR  240
SRRDYMNEND GDDEETVQVS NKRRRIDLEV NPLALSSPSS KHQQQDGDDD QHHEKVLNLC  300
HSSSVEELDL ELRLGDAPKV K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-126087229superman protein
2l1o_A3e-126087229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G08090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638381.11e-172uncharacterized protein LOC4338296
TrEMBLA0A0D9WEN70.0A0A0D9WEN7_9ORYZ; Uncharacterized protein
STRINGLPERR05G08090.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-26C2H2 family protein