PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G02370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 468aa    MW: 48733.9 Da    PI: 5.4088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G02370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.2e-16287333455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  LPERR05G02370.1 287 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 333
                      5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-21280341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-21280346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.75E-18286337No hitNo description
PfamPF000106.1E-14287333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSEAGNDLAE LLWDNGPAIR RPPAATTTPF PPFSCSVSST PHDVFKMRGG AGAEDDDDDD  60
TVPWLHYDGG DGDGDGDTAP LPPDYCSALL SGFSGAVVPS TSAAPAPPPA TESVTKQTRT  120
SGGGGVMNFT FFSRPLQRSQ PGGETASSSA SASVAVESMV VQTATNRLRT TPLFSDHRMA  180
WLQPPPPPPP RAAPTPAPLL PTTTPAPAAA APPPPPPAAT TATATATTSS VCSGNGDRSQ  240
LKRRDNTTQS TDWSASQDEL DLDDEPAAAH RRSSAARSSK RSRTAEVHNL SERRRRDRIN  300
EKMRALQELI PNCNKIDKAS MLEEAIEYLK TLQLQVQMMS MGTGMCMPPM MLPAAVAMQH  360
LQMQQMAHFP QFGAAMGLAA GFGMAGAAAG FDMVPMPRLA AGQFPCPMFP AAAAPPPMAM  420
FAAAPPPAPP QFPLAAAAGE QAAAPGGADA AGDVPVVPQG HQRQTKQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G02370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662938.11e-116transcription factor APG isoform X2
SwissprotQ6AT901e-106APG_ORYSJ; Transcription factor APG
TrEMBLA0A0D9WCJ00.0A0A0D9WCJ0_9ORYZ; Uncharacterized protein
STRINGLPERR05G02370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]