PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G19570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LFY
Protein Properties Length: 374aa    MW: 40810.4 Da    PI: 8.3749
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G19570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY471.65.2e-14413631386
          FLO_LFY   1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmks 92 
                      mdp++ fsa+  f+wd  +    +pa + +    ++          a++ releel+ +yGvr +tva+i+elGft stL+ m+++eldd+m++
  LPERR04G19570.1   1 MDPNDsFSAAhPFRWDLGPP---APAPVPPPPPPPP------PPPPANAPRELEELVAGYGVRLSTVARISELGFTSSTLLAMTERELDDMMAA 85 
                      777655876559****5322...2223322222222......24556778******************************************** PP

          FLO_LFY  93 lseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekk 186
                      l+ +fr+d+l+Ger+G++aa+raer rl++ +    r  +ls+++    d + + gl e+++ ++  ++ s++++++ ++++aa++k +++++k
  LPERR04G19570.1  86 LTGLFRWDILLGERFGLRAALRAERGRLMSLS---GRFVVLSDEH----DMAGSGGLGEDENMRR--MMMSAKKQAKIKGSAAARNKGKKARRK 170
                      *****************************966...6665666654....5677888988877554..444444444444444444444444444 PP

          FLO_LFY 187 kaskkkqkrkkkkelkse....ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGek 276
                      + +  +   ++ ++   +        +e++e++ + g+g +g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr fLlqvq++ak +G+k
  LPERR04G19570.1 171 RVDDLRLDMREDDNDDGDedgcGGGGSESTESSAGGGGGGGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQSMAKLHGHK 264
                      4444343333333322222222222334444455555778888*************************************************** PP

          FLO_LFY 277 cPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYv 370
                      +Ptkv           gasyinkPkmrhYvhCYalhcLdeeas+alrra+k+rgenvGawrqacy+plv+i+ar+g+didavf+ahprL+iWYv
  LPERR04G19570.1 265 SPTKV-----------GASYINKPKMRHYVHCYALHCLDEEASDALRRAYKARGENVGAWRQACYAPLVDISARHGFDIDAVFAAHPRLAIWYV 347
                      ***98...........9***************************************************************************** PP

          FLO_LFY 371 PtkLrqLChlerskas 386
                      Pt+LrqLCh++rs+++
  LPERR04G19570.1 348 PTRLRQLCHQARSTHA 363
                      ************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016984.3E-1641363IPR002910Floricaula/leafy protein
SuperFamilySSF1014474.45E-62737No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDPNDSFSAA HPFRWDLGPP APAPVPPPPP PPPPPPPANA PRELEELVAG YGVRLSTVAR  60
ISELGFTSST LLAMTERELD DMMAALTGLF RWDILLGERF GLRAALRAER GRLMSLSGRF  120
VVLSDEHDMA GSGGLGEDEN MRRMMMSAKK QAKIKGSAAA RNKGKKARRK RVDDLRLDMR  180
EDDNDDGDED GCGGGGSEST ESSAGGGGGG GGGERQREHP FVVTEPGEVA RAKKNGLDYL  240
FHLYEQCRLF LLQVQSMAKL HGHKSPTKVG ASYINKPKMR HYVHCYALHC LDEEASDALR  300
RAYKARGENV GAWRQACYAP LVDISARHGF DIDAVFAAHP RLAIWYVPTR LRQLCHQARS  360
THAAAAAALP PPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A5e-882123692170PROTEIN LEAFY
2vy2_A5e-882123692170PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G19570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0056201e-137AB005620.1 Oryza sativa mRNA for RFL gene, complete cds.
GenBankAF0659921e-137AF065992.2 Oryza sativa floral meristem identity protein (OSL) gene, complete cds.
GenBankAP0149601e-137AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-137CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652747.10.0PREDICTED: probable transcription factor FL
SwissprotQ0JAI10.0FL_ORYSJ; Probable transcription factor FL
TrEMBLA0A0D9W8X60.0A0A0D9W8X6_9ORYZ; Uncharacterized protein
STRINGLPERR04G19570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82693649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-86floral meristem identity control protein LEAFY (LFY)