PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G15300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 657aa    MW: 70291.1 Da    PI: 6.2937
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G15300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.2e-24133234199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  ++
  LPERR04G15300.1 133 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysTEPPVQ--FVYAKDVHGEEWRFRHIYRGTPRRHLLTTGWSAFVNQKKLLAGDSIVFM--RD 222
                      89*********************999****875444444..5999*********************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      + ++ +v+++r+
  LPERR04G15300.1 223 EAGNVHVGIRRA 234
                      99999****997 PP

2Auxin_resp116.13.1e-38280363183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++++Fev+Y+Prast+eF+v+++ v +a++v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  LPERR04G15300.1 280 AARMAASGQPFEVLYYPRASTPEFCVRASAVTTAMSVHWCPGMRFKMAFETEDSSRISWfMGTVAGVHPADPIRWPQSPWRLLQ 363
                      688999****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-36128236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-30131257IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-20132233No hitNo description
PROSITE profilePS5086312.59133235IPR003340B3 DNA binding domain
SMARTSM010191.3E-21133235IPR003340B3 DNA binding domain
PfamPF023621.0E-21133234IPR003340B3 DNA binding domain
PfamPF065075.9E-33280363IPR010525Auxin response factor
PROSITE profilePS5174511.03587657IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MLTFTDLAAP TGDGGRCVGS QLWAACAGSM SSVPPVGAAV YYFPQGHAEQ ASAGVASDLL  60
SAARVPPLVP CRVVAVRFMA DAETDEVFAR IRLAPLRPGD AVVDVGEAAA AAAEAEARQE  120
EEGGGRATKP ASFAKTLTQS DANNGGGFSV PRFCAETIFP ELDYSTEPPV QFVYAKDVHG  180
EEWRFRHIYR GTPRRHLLTT GWSAFVNQKK LLAGDSIVFM RDEAGNVHVG IRRAKRGFGD  240
DGEGLSSLPG WGLMRPNASA CGGNGAAKGG KVPPENVLAA ARMAASGQPF EVLYYPRAST  300
PEFCVRASAV TTAMSVHWCP GMRFKMAFET EDSSRISWFM GTVAGVHPAD PIRWPQSPWR  360
LLQVTWDEPE LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRIPPYS EFPLDAHQLF  420
APAAPFLSNP MAAHGFPFLP FFPDSSSSSS SVQPAGIQGA RHAHFAPSFQ DLHTGGNLRP  480
NLLLYSGIHL PTADHAAAPP PARIISTDLT IGSPIAPPDD DGAKPQGFLL FGQAILTEEQ  540
IKNSGGTRKR SPNASEGSGS GITEGSPNNN HTPSPFNPPC SGHEVDLGQC KVYVQSEEVG  600
RSLDISELSS FEELYARLSE MFSIDGDGMS HTRVVYNSLS GKDKHAGDEP FCATMGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-78738440388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007951e-179AK100795.1 Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691666.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 10-like
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A0D9W7800.0A0A0D9W780_9ORYZ; Auxin response factor
STRINGBGIOSGA016767-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10