PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G14400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 629aa    MW: 65338.2 Da    PI: 6.5088
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G14400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-10276332155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  LPERR04G14400.1 276 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 332
                      57*******************5444.2455535555.7799999*************98 PP

2AP251.32.9e-16375426155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  LPERR04G14400.1 375 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 426
                      89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-8276332IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-14276342IPR016177DNA-binding domain
CDDcd000183.09E-16276340No hitNo description
SMARTSM003802.2E-21277346IPR001471AP2/ERF domain
PROSITE profilePS5103217.108277340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-11277341IPR001471AP2/ERF domain
PRINTSPR003673.1E-6278289IPR001471AP2/ERF domain
CDDcd000182.46E-23375436No hitNo description
PfamPF008471.6E-10375426IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-18375436IPR016177DNA-binding domain
SMARTSM003802.9E-34376440IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-18376435IPR001471AP2/ERF domain
PROSITE profilePS5103219.309376434IPR001471AP2/ERF domain
PRINTSPR003673.1E-6416436IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQH HQNGSPSAAA GAIDISGAGD FYGLPTADAH HHLGMAGAED  60
ASYGVMDAFN RGTHETQDWA MRGLDYSGGS SDLSMLVGSS GGGRRPAVDN GGEAPKLENF  120
LDGNSFTDVH GQAAAAAGGY LYSSAASAVT GGAGYSNGGG GSGTIELSMI KTWLRTNQPQ  180
QQHTDQDMST DDASASSYAC SDVLAGSCGN GGGAAGGTAS SHGGQGLVLS MSTGMSVAVG  240
AESSSSENKR VDSPSGAVDG GGVARKSIDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR  300
REGQSRKGRQ GGYDKEDKAA RAYDLAALKY WGTTTTTNFP MNNYEKELEE MKHMTRQEYI  360
AHLRRNSSGF SRGASKYRGV TRHHQHGRWQ ARIGRVAGNK DIYLGTFSTE EEAAEAYDIA  420
AIKFRGLSAV TNFDMSRYDV KSILDSSTLP VVGGAARRLK EAELAAAGDH GGYYYGCPTI  480
AFGGQHQQPA PPLAVHYASA SAYGQVPSGW CKPEQDAVIA AQDLQHLHLG GATHNFFQQQ  540
PPAALYGGGN AFMMPMGADQ GQSSGGGGGG GAYGGDVGYG GGAVVDPYAA MRSAYELSQG  600
SSSSSVSVAK AAAANGFPDN WSSPFNGMG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635553.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-132BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0D9W6V40.0A0A0D9W6V4_9ORYZ; Uncharacterized protein
STRINGORGLA04G0150400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-111AP2 family protein