PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 435aa    MW: 45896.8 Da    PI: 5.3023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017120142123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C + F ++     H+r+H
  LPERR04G10530.1 120 FPCGVCRREFGSRKGVDGHMRVH 142
                      89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.72120147IPR007087Zinc finger, C2H2
SMARTSM003550.084120142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85243272IPR007087Zinc finger, C2H2
SMARTSM003551.7243267IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245267IPR007087Zinc finger, C2H2
PfamPF139120.1250263IPR007087Zinc finger, C2H2
SuperFamilySSF576674.68E-5294323No hitNo description
PfamPF139128.8E-6296320IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162296323IPR007087Zinc finger, C2H2
SMARTSM003551.5296318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEGDESSSNR RRDPPVEEGK ICRGGYYDSG SETEDDDDGG GGGRYVFQPR RVRVDDEEEG  60
VITTGCKRRR LEDVLASSSP PTPSSGYDSE GTISDSDHGG GGGGGGVAAS VAPRPRPVAF  120
PCGVCRREFG SRKGVDGHMR VHRQEEKKEK EKNPPVARLA IGKNKKKNSN DARDEVNVAF  180
AAPNAYEVAD DDDNSDRMAI LMVAAVAEPS PPPPQRPMAT AAAVANVVVG AHRHAAAAQG  240
PPYRCNRVDC DKEYATHQAL GGHIAGHVTK EKQEAAGGGG SGGGGDAKPA GEVRKHLCGV  300
CGQEFLTGVA LGGHMRKHYD GKVIVKRKKK VELPPAEPNT EAEVEALPPV TEPKTEVEME  360
ALPPAPEAKT EAEASPQPPP PAPAPAEQKV EVVAEQRSEE AAPVAAPVNV RRTVRIFGVD  420
LEKPADAEEQ DDGGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KRRRL
2161167GKNKKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9W5C50.0A0A0D9W5C5_9ORYZ; Uncharacterized protein
STRINGLPERR04G10530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.19e-12zinc-finger protein 3