PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G08410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8951.68 Da    PI: 10.5244
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G08410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA134.42.7e-421180270
             S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     +v ++e+ kGlnPG ivllv+++lll+f+vgny+ly+yaqk+lPPrkkkPvskkk+kreklkqGv++PGe
  LPERR04G08410.1 11 NVIIEEVnKGLNPGTIVLLVITTLLLLFFVGNYALYMYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE 80
                     55667778*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190134.0E-91280No hitNo description
PfamPF046893.9E-401680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MAEQFTDSAN NVIIEEVNKG LNPGTIVLLV ITTLLLLFFV GNYALYMYAQ KTLPPRKKKP  60
VSKKKMKREK LKQGVSAPGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1305265e-85BT130526.1 Oryza sativa clone RRlibC01181 mRNA sequence.
GenBankBT1291575e-85BT129157.1 Oryza sativa clone RRlibA00156 mRNA sequence.
GenBankAK2891335e-85AK289133.1 Oryza sativa Japonica Group cDNA, clone: J090099A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.12e-30PREDICTED: DNA-binding protein S1FA2
SwissprotQ7XLX63e-32S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D9W4L17e-52A0A0D9W4L1_9ORYZ; Uncharacterized protein
STRINGLOC_Os04g33440.27e-30(Oryza sativa Japonica Group)
STRINGBGIOSGA015143-PA7e-30(Oryza sativa Indica Group)
STRINGORGLA04G0086600.17e-30(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563