PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G08400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8913.63 Da    PI: 10.608
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G08400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.99.3e-431280370
             S1FA  3 vakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     v ++e+ kGlnPG+ivll v+++ll+f+vgny+lyvyaqk+lPPrkkkPvskkk+kreklkqGv++PGe
  LPERR04G08400.1 12 VLIEEVnKGLNPGMIVLLAVSTFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE 80
                     5667878*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190132.0E-171280No hitNo description
PfamPF046896.8E-401680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MADKFADSTN NVLIEEVNKG LNPGMIVLLA VSTFLLLFFV GNYALYVYAQ KTLPPRKKKP  60
VSKKKMKREK LKQGVSAPGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8339934e-76CT833993.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z77, full insert sequence.
GenBankBT1310314e-76BT131031.1 Oryza sativa clone RRlibC00345 mRNA sequence.
GenBankAK1212054e-76AK121205.1 Oryza sativa Japonica Group cDNA clone:J023087P18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.14e-32PREDICTED: DNA-binding protein S1FA2
SwissprotQ7XLX65e-34S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D9W4L01e-51A0A0D9W4L0_9ORYZ; Uncharacterized protein
STRINGLOC_Os04g33440.21e-31(Oryza sativa Japonica Group)
STRINGBGIOSGA015143-PA1e-31(Oryza sativa Indica Group)
STRINGORGLA04G0086600.11e-31(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.12e-11S1FA-like DNA-binding protein