PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G01360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 352aa    MW: 35550.2 Da    PI: 6.9778
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G01360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022250272123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  LPERR04G01360.1 250 HECSICGAEFSSGQALGGHMRRH 272
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.0E-11138163IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-8138161No hitNo description
SMARTSM003550.24139161IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201139166IPR007087Zinc finger, C2H2
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-8245272No hitNo description
PfamPF139126.9E-13249273IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429250277IPR007087Zinc finger, C2H2
SMARTSM003550.01250272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGVQEEAALA AAVVKGKRSK RQRAPPHAAV VTIASAAAST AEESMESSSS LSLSGGAAAM  60
AMAAEGSSTT SSPPPPPPSN TRGDEAVSGC VTEEEEDMAH CLMLLASGGH GERPAAKDQA  120
KFRSRRPADG GAGAGEFVYE CKTCSKCFPS FQALGGHRTS HKKPRLLAPP PPPADDKIDT  180
SAAAAAAEEK SSPAPAKASP PRPATKATPI TTAAADPTVL AIPVMIPKQE VVDAGAAAIA  240
GGVAKQPRVH ECSICGAEFS SGQALGGHMR RHRPLIPASA SAASTVSVLD GGEAPRQKEK  300
SLLELDLNMP APCDDAAANE ATSPAAATAA FAFAVKERSP LMVPAALVGC HY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G01360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634434.11e-116zinc finger protein ZAT5
TrEMBLA0A0D9W2600.0A0A0D9W260_9ORYZ; Uncharacterized protein
STRINGLPERR04G01360.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-17C2H2 family protein