PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G30870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 338aa    MW: 33579.9 Da    PI: 8.6847
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G30870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.17.9e-3544142183
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec..e 74 
                      a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++                  +    s c  +
  LPERR03G30870.1  44 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDSLPSLdpaafasipgaggaaaagK----SGCscT 133
                      5899*************************************************************7776666665554422220....333211 PP

              TCP  75 aesssssas 83 
                      +e+  s++s
  LPERR03G30870.1 134 SETTTSKGS 142
                      111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-3446150IPR005333Transcription factor, TCP
PROSITE profilePS5136932.33647105IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEAAGAGDGG GSGRSTSSKR GRGAEMVAAK AGTTTASRIY RVRATGGKDR HSKVYTAKGI  60
RDRRVRLSVA TAIQFYDLQD RLGFDQPSKA IEWLINAASP AIDSLPSLDP AAFASIPGAG  120
GAAAAGKSGC SCTSETTTSK GSELSLSRDK EVTVASAPAT ATAAAASFTE LLIAGGGGAA  180
IGNGGEQRQQ SWQQPEAAGG GGKGGGGGEG VAAYGGFSAG SSFGNAPPIG MVPAQPFNFS  240
GDISHYDHLA APAAPAAAGD YNLNFSMSSG FLGANRGTLQ SNSPSSFSGH HHQQQHLQRL  300
DGSTISFLLG HAAAAGGGGV HPAASEGQLT SSSALQLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2652106155Putative transcription factor PCF6
5zkt_B5e-2652106155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200207GGKGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G30870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1333402e-75AC133340.4 Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence.
GenBankAK2427882e-75AK242788.1 Oryza sativa Japonica Group cDNA, clone: J090057A17, full insert sequence.
GenBankAP0149592e-75AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629084.11e-112transcription factor PCF6
SwissprotQ10CE81e-113PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A0D9VZV60.0A0A0D9VZV6_9ORYZ; Uncharacterized protein
STRINGLPERR03G30870.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.23e-34TCP family protein