PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 578aa    MW: 65295 Da    PI: 9.0272
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15e-1684166997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++ ++ +++p+kf++++gg+     t+ le+++  ++ vk+  +k+ +r+vl  GW  Fv+an+++e+D++ F+++++s+f   v ++
  LPERR03G21760.1  84 SANFRHSMIIPNKFLDHFGGE--ILATIELESPRVIVYIVKV--TKHMNRTVLNCGWGAFVDANQIEENDSLFFRHIENSRF--EVLIL 166
                      4445566********888877..6789***************..*********************************99999..66665 PP

2B361.71.2e-19274370499
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                      v++ s+v  +g lv+ k++a++h  +  +s+t+tle+++  ++W  k+ +rk +++y+l + W eFv++n+LkegD+++F+l+  + ++f+ +v
  LPERR03G21760.1 274 VMKYSNVKLRGSLVIAKHYASAHFPN--TSQTITLESRDKnKKWHPKFYIRKDRSGYILYGRWTEFVHDNRLKEGDICIFELTkFTgRNFRATV 365
                      6777999999*************855..6789*****6655*******88999999*************************8855568888888 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  LPERR03G21760.1 366 HLLRE 370
                      88775 PP

3B345.51.3e-144915741599
                      -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       +++ k+fa+++       e++   l+  +++ W++k+  + +sg   ++t  W+ Fv++n L+ +D+++F+l+++ ++ +++v+++r+
  LPERR03G21760.1 491 TIRFGKEFATRYlpR---GEQTLTLLMKGKSKAWQIKM--CPRSGDaQMFTMDWRAFVHDNCLRIKDICLFQLMNNeRRLTMTVHIIRH 574
                      356679999999542...2333445566799*******..666655599*************************998*********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.1876169IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-1876173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-1777171IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-1377167No hitNo description
SMARTSM010193.5E-879169IPR003340B3 DNA binding domain
PfamPF023622.2E-1483165IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-22263371IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-23266367IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-22269369No hitNo description
SMARTSM010193.4E-12271371IPR003340B3 DNA binding domain
PROSITE profilePS5086313.747271371IPR003340B3 DNA binding domain
PfamPF023622.1E-18272370IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-18467575IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-16468575IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-11473573No hitNo description
SMARTSM010190.0037475575IPR003340B3 DNA binding domain
PROSITE profilePS5086310.01477575IPR003340B3 DNA binding domain
PfamPF023621.9E-13491574IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MPTRRQRQWA ELRSSRGLAA SSFSNGVASA SARPRGSAGF FSPGLITTRH QLAELLCVKK  60
PCDCSNRYGD HLNVKMKCFH IQMSANFRHS MIIPNKFLDH FGGEILATIE LESPRVIVYI  120
VKVTKHMNRT VLNCGWGAFV DANQIEENDS LFFRHIENSR FEVLILDSDG CEKIFSRSGI  180
KRAYNVQERN ADPIDIASST HDNDTMDSSS SGESGEEFTE SGSSEHESCH ELDDPQTPLV  240
PVLSHGTSLS EAQEEKIAML IQEIRPEIPV YVAVMKYSNV KLRGSLVIAK HYASAHFPNT  300
SQTITLESRD KNKKWHPKFY IRKDRSGYIL YGRWTEFVHD NRLKEGDICI FELTKFTGRN  360
FRATVHLLRE TKSHSFGAFC SSPKRVDSGG RTRPRVSLTE GRCGTKGIST NSVKKEPDDG  420
QCNKGEGKHQ EPLSSDDSGG SSESYLISQK ASLTKAQKRK VKEIACSYES EVPIYASVMN  480
KSNVGTDGSY TIRFGKEFAT RYLPRGEQTL TLLMKGKSKA WQIKMCPRSG DAQMFTMDWR  540
AFVHDNCLRI KDICLFQLMN NERRLTMTVH IIRHNDKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021691e-122AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0D9VWF90.0A0A0D9VWF9_9ORYZ; Uncharacterized protein
STRINGLPERR03G21760.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]