PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 1651aa    MW: 185996 Da    PI: 9.4021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.6e-131232031197
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ ++lp kfa+++gg+   s t++l+ ++   + v++  + + +++vl+ GW+ Fv a++++e+D + F++ g+s+f   v ++
  LPERR03G21720.1 123 DSRRSMILPDKFANHFGGN--ISGTIKLQAPNCILYVVEV--TVCMNKTVLKCGWEAFVAAHRIEENDYLFFSHLGNSRF--EVLIL 203
                      456679*******888988..6779***********9*99..999999****************************9999..66655 PP

2B334.92.7e-113274101598
                      -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      +lv+  ++a+ h   ++es+ +tl+   ++++W  ++  r+ ++  +l++ W+ Fv++n+++e+D++vF  +++  +f ++v+++r
  LPERR03G21720.1 327 LLVIASRYAALHF--PHESRNVTLQRpCKSKKWHPTFYKRNEKSINILRGYWSYFVQDNRVQENDICVFVPTKDaGNFIFTVHLLR 410
                      5899999999997..446778999995677*******445555559************************9988899988888877 PP

3B344.82.2e-145276051895
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                      +  ++a+   ++ ++  + +l  +sg+ W   + + +++s r +l +GW++Fv++n+L++gD+++F+l+ ++ ++ ++ v+
  LPERR03G21720.1 527 FGARYAAVVHLPDRR--QTVLLERSGKIWATVMHVkNGRSTRRFLINGWSRFVRDNRLRVGDICLFELKtHEtKKLTMAVH 605
                      455555444555433..4677889*****999966566666677778********************99444455555554 PP

4B343.55.7e-146497291096
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +++++ +++p +f++++gg+   s t++le+++g  + v++  +   +++vl+ GW+ Fv+a++++e+D+++F+++++s+f  +v +
  LPERR03G21720.1 649 ANSRRSMIMPDSFVNHFGGN--ISGTIKLESPNGILYVVEF--TEFMNKTVLKCGWEAFVDAHHIEENDSLLFRHIENSRF--KVLI 729
                      45667799******888988..6779***************..999999***************************99999..5544 PP

5B339.31.2e-128759581699
                      EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      lv++  +a+ h   ++es+ +tl+   ++++W  k+  rk +++ +l++ W++Fvk+n+L e D +vF  +++ s+f ++v v+r+
  LPERR03G21720.1 875 LVISSAYAAVHF--PHESRSVTLRRpYKSKKWHPKFYKRKDGSMNILRGYWSDFVKENRLLEQDLCVFVPTKDaSNFAFTVYVLRA 958
                      788888888886..346678999995677*******66777777*************************99999*******99986 PP

6B346.66.4e-15108111552196
                       HH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   21 kfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                       ++a++  ++ ++  + +l  +sg++W   + + + +s r +l +GW++Fv++n+L++gD+++F+l+ r++++l++ v
  LPERR03G21720.1 1081 QYAAAVHLPDRR--QTVLLERSGKRWATVMHVnNARSTRRFLINGWSRFVRDNRLRVGDICLFELKTRERKKLTMAV 1155
                       555555555444..4777888*****999977555555566777*********************977776666544 PP

7B3413.4e-1311871270798
                       .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3    7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98  
                       ++d+++s  ++lp ++++++ggk   + t++le+++g  + v++    + +++vl+ GW+ Fv+a+++k++ +++F+++++s+f   v +++
  LPERR03G21720.1 1187 TADSMRS--MILPSRYVNHFGGK--FPGTIKLESPNGILYVVEV--IEYMNKTVLQCGWEAFVDAHRIKQNNSLLFRHIENSRF--EVLILD 1270
                       4555554..8*******888999..6669***************..999999***************************99999..666655 PP

8B345.61.2e-14137914621699
                       EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3   16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99  
                       lv++ ++a+ h   ++es t+tl+ +s  ++W  k+  rk +  ++l++ Wk+Fv++n L+e D+++F  ++  ++f+++v+++r+
  LPERR03G21720.1 1379 LVISSRYASVHF--PRESATITLQMPSKrKKWHPKFYKRKDKTDHMLRGQWKNFVHDNCLQEEDICLFAPTKGgRNFTFTVHLLRA 1462
                       799999999997..568889***9966659******66777778*************************886669**999999986 PP

9B331.14.1e-10160416464297
                       TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
                       +g  W++k+            +GW++Fv++n+L +gDf++F+l++ ++ ++ v+++
  LPERR03G21720.1 1604 KGMIWQIKY------------DGWRKFVHDNRLHVGDFCLFELKE-KKLTMEVHII 1646
                       444444444............8********************976.8888888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-19111208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955113206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-16113208IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-14115204No hitNo description
SMARTSM010193.4E-6116206IPR003340B3 DNA binding domain
PfamPF023622.8E-11124202IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16304411IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16305411IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.11312412IPR003340B3 DNA binding domain
CDDcd100171.90E-13312407No hitNo description
PROSITE profilePS5086310.884313412IPR003340B3 DNA binding domain
PfamPF023629.0E-9327411IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-17499607IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-16500606IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-15505592No hitNo description
PROSITE profilePS5086312.026510608IPR003340B3 DNA binding domain
SMARTSM010193.0E-4510610IPR003340B3 DNA binding domain
PfamPF023622.1E-12522607IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-20639739IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-17639733IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.224640733IPR003340B3 DNA binding domain
CDDcd100171.60E-16642730No hitNo description
SMARTSM010193.2E-9643733IPR003340B3 DNA binding domain
PfamPF023621.6E-12649728IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-16851958IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16853957IPR015300DNA-binding pseudobarrel domain
CDDcd100175.28E-15859954No hitNo description
PROSITE profilePS5086311.209860959IPR003340B3 DNA binding domain
SMARTSM010190.0048866959IPR003340B3 DNA binding domain
PfamPF023621.1E-10875958IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-1810501157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-1610511157IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-1310561156No hitNo description
SMARTSM010190.003110631162IPR003340B3 DNA binding domain
PfamPF023627.0E-1310771155IPR003340B3 DNA binding domain
PROSITE profilePS5086312.23810951159IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-1911771274IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.50511791272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-1611791272IPR015300DNA-binding pseudobarrel domain
CDDcd100175.75E-1511811270No hitNo description
SMARTSM010192.0E-911821272IPR003340B3 DNA binding domain
PfamPF023623.8E-1111861268IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-1813561462IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1913561462IPR015300DNA-binding pseudobarrel domain
CDDcd100174.56E-1913631461No hitNo description
SMARTSM010190.001113631463IPR003340B3 DNA binding domain
PROSITE profilePS5086310.89813641463IPR003340B3 DNA binding domain
PfamPF023624.4E-1313791462IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-1215571646IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.03315611649IPR003340B3 DNA binding domain
CDDcd100172.71E-1415741646No hitNo description
Gene3DG3DSA:2.40.330.103.5E-1215761646IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-816041646IPR003340B3 DNA binding domain
PROSITE profilePS508638.92416141649IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1651 aa     Download sequence    Send to blast
MHFGSLSITR QWGPRVSPLL SSSSSSTLPP NLSVCLGGVA ITGCRRRRPS VAADAAVEWD  60
APRTPHGRHG LVRRLNHPLF RVGNSVEMAG SGSRMKKSCD CCQTYLGHLG GKMNCFLRRM  120
TADSRRSMIL PDKFANHFGG NISGTIKLQA PNCILYVVEV TVCMNKTVLK CGWEAFVAAH  180
RIEENDYLFF SHLGNSRFEV LILDSDGCEK VFSCTGIKNN CSMKEKSVDA VSISSSSCDD  240
TVQSSESEGF ARYQKGSFSR KDSPSEHESV DSGDLQTSQE PYTLSRFSYL SDVQKERVDA  300
LIQKIQPKIT VFVAIMRKSN VQLPAPLLVI ASRYAALHFP HESRNVTLQR PCKSKKWHPT  360
FYKRNEKSIN ILRGYWSYFV QDNRVQENDI CVFVPTKDAG NFIFTVHLLR AAATYSMGGT  420
GVDRIGSSVG ITHAMKSSSD IIVKEEPIEA DDVSLENSRN GVSEDSEDSK GPADPFYIVP  480
CKSRLSSLQK KIVKDKVRSI QSKVPLYVAL MKKTNVELTG RRCQLEFGAR YAAVVHLPDR  540
RQTVLLERSG KIWATVMHVK NGRSTRRFLI NGWSRFVRDN RLRVGDICLF ELKTHETKKL  600
TMAVHAISSS NQFEMAGSGS RMKKSCDCCQ RYLEHLDGKM NCFLRRMTAN SRRSMIMPDS  660
FVNHFGGNIS GTIKLESPNG ILYVVEFTEF MNKTVLKCGW EAFVDAHHIE ENDSLLFRHI  720
ENSRFKVLIL GSDDCEKVFS CAGIKNNCSI EEKSADPVSI SSSSCDDINT AQSSESEGSA  780
RYQKGNFSHR RKISKLASSS SSYGDSGEDS PSEHDNVRSG DLQTSQEPYV LSRFHHLSES  840
QKERVDELIK EIQPEITVFV AVMRKFNVQL PTPFLVISSA YAAVHFPHES RSVTLRRPYK  900
SKKWHPKFYK RKDGSMNILR GYWSDFVKEN RLLEQDLCVF VPTKDASNFA FTVYVLRAAA  960
TYSRGGTGVD RIGSSVRTIH VKSASDVIIR EEPIEADDVS LENSRNGVSD ESVESEDTEG  1020
PADPPCIVPS ASKSRLSSLQ KNIVNEKVKS IQSKVPIYVA VMNKTNIGLS SCRSQLEFGA  1080
QYAAAVHLPD RRQTVLLERS GKRWATVMHV NNARSTRRFL INGWSRFVRD NRLRVGDICL  1140
FELKTRERKK LTMAVHTISS KQSLAPVAKN TWNIWGGKMS YFLRQMTADS MRSMILPSRY  1200
VNHFGGKFPG TIKLESPNGI LYVVEVIEYM NKTVLQCGWE AFVDAHRIKQ NNSLLFRHIE  1260
NSRFEVLILD TDDCEKVFSC AGIKNSSCAH DKAVDPADIS GSSRDDTEQS SRSERSTRCK  1320
MDIFNDHKNN VNWTEVSSSS EELAQKERVV AHIKDIQPQI TVFVAVMKKC NLQSPAPYLV  1380
ISSRYASVHF PRESATITLQ MPSKRKKWHP KFYKRKDKTD HMLRGQWKNF VHDNCLQEED  1440
ICLFAPTKGG RNFTFTVHLL RAAATHSTGG TDICKIGSNH NGMNANMASQ VHLKEEPDDG  1500
ENVSSESDKH GVSHESQESK DSASPSEPPY ILSRARHQLS QWQKKKVEAK VRAIQSKFPI  1560
YVAIIGRISG GDGYGRICQL ELGSRYAAAH LPDTNHQTVV LQCKGMIWQI KYDGWRKFVH  1620
DNRLHVGDFC LFELKEKKLT MEVHIIFNLR R
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651606.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0D9VWF30.0A0A0D9VWF3_9ORYZ; Uncharacterized protein
STRINGLPERR03G21720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]