PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 418aa    MW: 48039.1 Da    PI: 8.5269
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.9e-1134961178
                     HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
               B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
                       ++r+++p +f   +  +g+   +kt++le+ +g +++v++  +kk +r+vl++GW+ Fv+a+gLk g+
  LPERR03G21390.1 34 DFHNRMIIPENFE--YyfKGV--ITKTIKLETCNG-TFDVQI--TKKLNRMVLGSGWEPFVSAHGLKMGE 96
                     34678*******4..436777..6779**999665.89****..***********************998 PP

2B332.21.9e-101602273196
                      .--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3  31 eesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                      +es+ +t++   ++++W  ++ y++k+g+  +l++ W+ Fv++n+++e D++vF  +++  +f+++v++
  LPERR03G21390.1 160 HESRNVTVQRpCKSKKWHPTF-YKRKDGSiNILRGYWSYFVQDNRVQEHDICVFVPTKHaGNFTFTVHL 227
                      45667888885577*******.666666669************************88777999888887 PP

3B337.34.9e-123484103596
                      EEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  35 tltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + +l  + g+ W   + + +++s r +l +GW++Fv++n+L+ gD+++++l+ +++++l++ v
  LPERR03G21390.1 348 QTVLLERLGKIWATMMHVkNGRSMRRFLINGWNRFVRENRLRIGDICLLELKTHETKKLTIAV 410
                      356677789***999977466666677788********************9977777777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-122096IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-102196IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.51424116IPR003340B3 DNA binding domain
CDDcd100171.14E-152596No hitNo description
PfamPF023623.6E-92796IPR003340B3 DNA binding domain
SMARTSM010190.227116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-12151231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.17E-10152226No hitNo description
Gene3DG3DSA:2.40.330.101.5E-11152231IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-8160227IPR003340B3 DNA binding domain
PROSITE profilePS508639.361161231IPR003340B3 DNA binding domain
SMARTSM010190.061298416IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-14305408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13306405IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-10311398No hitNo description
PfamPF023622.7E-10348410IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87350414IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MRKPNTRSTE RVEYYLCNRM DNQEKHFFKV MIGDFHNRMI IPENFEYYFK GVITKTIKLE  60
TCNGTFDVQI TKKLNRMVLG SGWEPFVSAH GLKMGEYSPS EHESVESADL QTSQEPYILL  120
HFSYLSDVQK ERVDALIQKI QPKITVFVAI MRYAALHFPH ESRNVTVQRP CKSKKWHPTF  180
YKRKDGSINI LRGYWSYFVQ DNRVQEHDIC VFVPTKHAGN FTFTVHLLCT SATCSMGGTC  240
VDRIGSSVGT THAVNSSIVM EEPIEADDVS LENCRNGVSD ESEDSEDSEG PADPPYIIVK  300
EKVRSIQSKV PLYVALMKKT NIELTGCHCQ LEFGACYSAT VHLPDRRQTV LLERLGKIWA  360
TMMHVKNGRS MRRFLINGWN RFVRENRLRI GDICLLELKT HETKKLTIAV HAISSNQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633049.11e-132B3 domain-containing protein Os03g0619600
RefseqXP_015633050.11e-132B3 domain-containing protein Os03g0619600
SwissprotQ6AV221e-133Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0D9VWB40.0A0A0D9VWB4_9ORYZ; Uncharacterized protein
STRINGLPERR03G21390.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]