PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G19360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 181aa    MW: 18956.8 Da    PI: 8.2213
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G19360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.82.3e-302103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA  r+ +Pv+Gavg++++ +++l+q
  LPERR03G19360.1   2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLWTSNWHLCQ 95 
                      6*********************9998656778************************************************************** PP

           DUF260  90 lkaelall 97 
                      ++++++l+
  LPERR03G19360.1  96 AAVDTVLR 103
                      *9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.9851107IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-262100IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR  60
PALFQSLLYE AAGRTINPVH GAVGLLWTSN WHLCQAAVDT VLRGGAIGPL PEANRSGAAA  120
FSTAKRVRNP PAPSCDLGLC LLSHGSPQAL RPVTPSMSSD ESVTTTTGGG ERDPVLLNLF  180
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0976401e-124FP097640.1 Phyllostachys edulis cDNA clone: bphyem213i10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650230.11e-102PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN112e-68LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0D9VVM21e-130A0A0D9VVM2_9ORYZ; Uncharacterized protein
STRINGLOC_Os03g33090.14e-99(Oryza sativa Japonica Group)
STRINGORGLA03G0213800.14e-99(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-69LOB domain-containing protein 37