PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G13430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 330aa    MW: 36759.6 Da    PI: 8.9413
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G13430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.8e-114575434
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34
                      k+ rr+++NReAAr+sR+RKka++++Le  
  LPERR03G13430.1 45 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 75
                     5899************************974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-742105IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.8414488IPR004827Basic-leucine zipper domain
PfamPF001707.3E-84675IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.85E-74681No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-84887No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141447.2E-33128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADASSRTDT STVLDTDDKN QMADGQNGAI MPSNSSDRSD KPMDQKVLRR LAQNREAARK  60
SRLRKKAYVQ QLESSKLKLA SLEQEITKAR QQGIYISSSG DQTHAMSGNG AMTFDLEYAR  120
WLEEQNKQIN ELRTAVNAHA SESDLRLIVD GIMAHYDEIF RLKGVAAKAD VFHILSGMWK  180
TPAERCFLWL GGFRSSELLK LLVNQLEPLT EQQLLGLSNL QQSSQQAEDA LSQGMEALQQ  240
SLADTLAGSL GPSGSSGNVA NYMGQMAMAM GKLGTLENFL RQADNLRQQT LHQMQRILTI  300
RQASRALLAI HDYFSRLRAL SSLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G13430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422570.0AK242257.1 Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence.
GenBankAY6204140.0AY620414.1 Oryza sativa (japonica cultivar-group) clone OSJNBa0005J15 bZIP transcription factor mRNA, complete cds.
GenBankHM9911730.0HM991173.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632465.10.0transcription factor TGA2.2
RefseqXP_015632466.10.0transcription factor TGA2.2
RefseqXP_015632467.10.0transcription factor TGA2.2
SwissprotQ6IVC30.0TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBLA0A0D9VTD90.0A0A0D9VTD9_9ORYZ; Uncharacterized protein
STRINGLPERR03G13430.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-143TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC
    Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light.
    Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20
    [PMID:15986920]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]