PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G13190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 404aa    MW: 43820 Da    PI: 9.2688
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G13190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.4e-11130186155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  +   g krk  + g ++  ++Aa+a++ a++k++g
  LPERR03G13190.1 130 SCYRGVTRHRWTGRYEAHLWDnSCRrEGqKRKGRQ-GGYDKDDKAARAYDLAALKYWG 186
                      79*******************55554446667777.669998*************987 PP

2AP250.84e-16229281156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      s y+GV++++++grW A+I  +s    +k  +lg+f t++eAa+a++ a++k++g+
  LPERR03G13190.1 229 SIYRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFATEQEAAEAYDVAALKFRGA 281
                      57****************999754...5**********99*************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-8130186IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-14130195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-12131195IPR001471AP2/ERF domain
PROSITE profilePS5103217.069131194IPR001471AP2/ERF domain
SMARTSM003802.0E-19131200IPR001471AP2/ERF domain
CDDcd000185.42E-17132194No hitNo description
PRINTSPR003677.1E-7132143IPR001471AP2/ERF domain
PfamPF008475.6E-11229280IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18229289IPR016177DNA-binding domain
CDDcd000188.16E-24229290No hitNo description
Gene3DG3DSA:3.30.730.104.6E-19230288IPR001471AP2/ERF domain
PROSITE profilePS5103219.085230288IPR001471AP2/ERF domain
SMARTSM003802.3E-30230294IPR001471AP2/ERF domain
PRINTSPR003677.1E-7270290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSPPTNGAIS HAFPPMGPMA PDALLFPFDG LSYDDFAFLP PAAPAPAPLT VADHPAPLLL  60
LPPSPSSCNN GDYATGGNMA LAAPTSTTTE STPATPTSWG GGAGGGSSAR AVRSLSPVMP  120
PVQVTGQRTS CYRGVTRHRW TGRYEAHLWD NSCRREGQKR KGRQGGYDKD DKAARAYDLA  180
ALKYWGVNAT TNFPKESYAK ELEEMQNMSK QELVASLRRK SNGFSRGASI YRGVTRHHQQ  240
GRWQARIGRV SGNKDLYLGT FATEQEAAEA YDVAALKFRG ANAVTNFEPS RYNLQAISQN  300
DLPITPSGRR QINKKPAPEA EGQIALHSPA ISQQSSNSSV PNYLFHNLLQ FQPYGPPQAL  360
PLLGYNFAEP GFYWPLGDEE QKVQPNTKVE MANGLLHLAN YAAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098390.0AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629274.11e-167PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ5YGP71e-105PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0D9VTA90.0A0A0D9VTA9_9ORYZ; Uncharacterized protein
STRINGBGIOSGA010867-PA1e-166(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.13e-76AP2 family protein