PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G09330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 262aa    MW: 27376.1 Da    PI: 7.9424
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G09330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.47.9e-41271271100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ae
  LPERR03G09330.1  27 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAE 120
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l +l+++
  LPERR03G09330.1 121 LTYLQAH 127
                      **99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.34826128IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-4027125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSSGSGATAL GGGGGGGGGP SGGGGGPCGA CKFLRRKCVS GCIFAPYFDS EQGAAHFAAV  60
HKVFGASNVS KLLLQIPAHK RPDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE  120
LTYLQAHLAT LELPTPPMPP APPQMPMPMP VPFSISDLPS STSVPTTVDL SALFDPPPPQ  180
PQWAAPLQQH HHHHQQHHHQ LRQPPSYGTP SVARAAPSGM PAESSEGGGG GGDLQALARE  240
LLDRHRSAVK LEQPPLPPHS RS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940771e-157FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629413.11e-108PREDICTED: LOB domain-containing protein 30
SwissprotO221312e-73LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0D9VRV50.0A0A0D9VRV5_9ORYZ; Uncharacterized protein
STRINGBGIOSGA011118-PA1e-108(Oryza sativa Indica Group)
STRINGLOC_Os03g14270.11e-108(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.18e-70LOB domain-containing protein 18