PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G04950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 516aa    MW: 56091.9 Da    PI: 7.6605
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G04950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-12245301155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  LPERR03G04950.1 245 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 301
                      789******************333.44555535555.779999**************98 PP

2AP246.49.7e-15346395355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  LPERR03G04950.1 346 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 395
                      9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-14245311IPR016177DNA-binding domain
CDDcd000181.08E-17245311No hitNo description
SMARTSM003802.0E-22246315IPR001471AP2/ERF domain
PfamPF008471.0E-8246301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-12246310IPR001471AP2/ERF domain
PROSITE profilePS5103216.871246309IPR001471AP2/ERF domain
PRINTSPR003678.6E-6247258IPR001471AP2/ERF domain
CDDcd000183.17E-24344405No hitNo description
SuperFamilySSF541718.5E-18344405IPR016177DNA-binding domain
SMARTSM003802.9E-33345409IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18345403IPR001471AP2/ERF domain
PROSITE profilePS5103219.203345403IPR001471AP2/ERF domain
PfamPF008471.3E-9346395IPR001471AP2/ERF domain
PRINTSPR003678.6E-6385405IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSSARGY GDDGGEGNGA GDGDGSCSSP AAASPLMAMP LHSDGSVQYD  60
APDWRHAEAK VDPKLEDFMS VVSYSNKSSS DLYNNSSSSH ADQIKYHHHV HDFSSPYFHS  120
SNNNVGGGGG IDINMNAPPP PAHDHHHPFQ LPPNHGQYFL GTTNPMPAPP MYNSGVSVGA  180
AVDGSMSISG IKSWLRQAMY VPERSSASTA ALSLSVPPIS QPPGETQLPV PVARKPAQTF  240
GQRTSQFRGV TRHRWTGRYE AHLWDNTCRK EGQTRKGRQG GYDKEEKAAR AYDLAALKYW  300
GPTTHINFPL STYEKELEEM KHMTRQEFIA HLRRNSSGFS RGASMYRGVT RHHQHGRWQA  360
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISKYDVK RICSSTHLIG  420
GDLACRRSSP TRVSPPPPDG ANSDANSVDT SDVSSQRGAH LLHDLQYAHA MKFEAGESSG  480
GNNNNNWMAT AAAAARPVAG IPTTVHQLPV FALWND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851150.0AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629390.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D9VQ610.0A0A0D9VQ61_9ORYZ; Uncharacterized protein
STRINGORGLA03G0053700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-114AP2 family protein