PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G03610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 1521aa    MW: 166992 Da    PI: 6.0227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G03610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001714111436123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       + C    C++ F ++ +L+ H+r+ +
  LPERR03G03610.1 1411 FHCDieFCDMAFETRAELRAHMRNiC 1436
                       6799999****************877 PP

2zf-C2H212.40.0004814361458323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  LPERR03G03610.1 1436 CTdeSCGKRFSSHKYLKRHQCVH 1458
                       77778***************998 PP

3zf-C2H213.60.000214941520123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  LPERR03G03610.1 1494 YKCSapDCGQSFRYVSDYSRHRKKfnH 1520
                       99********************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-133475IPR003349JmjN domain
PROSITE profilePS5118313.6053576IPR003349JmjN domain
PfamPF023754.4E-133669IPR003349JmjN domain
SuperFamilySSF511971.37E-27214395No hitNo description
SMARTSM005582.5E-47230399IPR003347JmjC domain
PROSITE profilePS5118434.64233399IPR003347JmjC domain
PfamPF023731.3E-36263382IPR003347JmjC domain
Gene3DG3DSA:3.30.160.606.8E-414101433IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551014111433IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00614341463IPR007087Zinc finger, C2H2
SMARTSM003552.314341458IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.37E-614361470No hitNo description
PROSITE patternPS00028014361458IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-714401464IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-1014581514No hitNo description
PROSITE profilePS5015711.96714641493IPR007087Zinc finger, C2H2
SMARTSM003556.6E-414641488IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-1114651488IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014661488IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-1014891516IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36514941521IPR007087Zinc finger, C2H2
SMARTSM003550.1414941520IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014961520IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1521 aa     Download sequence    Send to blast
MPPQPPPPAA ASASSAAATA PDPAVPAWLR GLPRAPEYRP TESEFADPIA FLSRVEREAA  60
AYGICKVIPP HPRPSRRFVF AHLNRSLVSS CDAPVPTTSD SSNPSSSTPS ASAAVFTTRH  120
QELGTPRRGR PTPQVLKQVW QSGERYTLDQ FEAKSRAFSK THLAGVHEPS ALTVESLFWK  180
ASTDRPIYIE YANDVPGSGF AAPVQLQRQR KKRKRESSPM DEWEKSAGWR LSNSPWNLQA  240
IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP  300
GDRAVEIEEV IRLHGYGGNP DRIASLAVLG EKTTLMSPEV LIDNGVPCCR LVQYPGEFVV  360
TFPRAYHVGF SHGFNCGEAA NFATPQWLKF AKEAAVRRAV MNYLPMLSHQ QLLYLLAVSF  420
ISRNPRELLS GIRTSRLRDR KKEERELLVK REFLQDMISE NGLLCSFMEK KSVNNVVLWE  480
PDLLPSLTSL HSCSSSSKAP EKKGEEGPRI EFTQSSSKDN SLSHGTECMT STQSKGVSMD  540
RQDSKHAPDG EKVDTDDEDG LPFDLSIDSG SLTCVACGIL GFPFMAILQP SRKALEEISV  600
VDKEKYKLSC EKENCSNVLP CSPNDGVSGC PLIADRLSSP VENANLSHQN VNPIRSGISL  660
MGNELDGTVR KHSGISCSCS NENTIHPYGD TETPEKKLLS DSPGSELNKQ KGRGDVNIQA  720
VEGSEETISW NTCCTFARPR IFCLQHALEI EELLASKGGV HTLIICHADY VKLKALAISI  780
AEEIEFQFDY KDVALANASK SDLQLINISI DDEGYEEEGT DWTSRMGLNL KHCSKIRKEA  840
SGSQKQPPLS FWGLFSKPSP ISIVPNLKWL CRKARTPYKV VGYASSADVA ATPDKVKPAV  900
TKTQTETSAN AHENAKSEQT LQQGSVPQES NDVADMCMRP KQNDQDGHGL INIPVAEYPM  960
MHQVSEGAVN VNESDDPTCS FDSQDSPTTA SVSVAELTGE QCNVETTELS SLTTPVQQLL  1020
DNELIAEGGS MTLGSNHEYL ESDNATSACQ DEQLQAHQDQ ETMVLCNNPN TELVRPCLVK  1080
GATFAGELQG GTASSTLENE DSCGNTFYCS DTVLKKSKSD TDDQPETCGR SAVLVTPKLS  1140
CDQMISSTDG SCSLAMDCTV SIDAAFSSEK LSMTHDLMNN ELQAVHNSKA LINSVKTTQA  1200
EGSLTDLKAT NLNYIHTTQL PQESPRSDVI IAEGTQSASD TVISGQNGTS IHAESNSFDI  1260
LLGVLADESK VASGKDEVGK ASLTLMTLTS NDHTTDDATQ GEIAEITGSS GNIALLNKDP  1320
TGFCASDIVS RSIGSSNRTN IICYARRKHK RKCGPELSIN SSQSYVSFAR SPCESLRPRT  1380
RPAIVEDMTD ETKTVEASAT KKSKRTKVGT FHCDIEFCDM AFETRAELRA HMRNICTDES  1440
CGKRFSSHKY LKRHQCVHRD ERPFKCPWDG CPMTFKWLWA QTEHIRVHTG ERPYKCSAPD  1500
CGQSFRYVSD YSRHRKKFNH Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A6e-75284138346Transcription factor jumonji (Jmj) family protein
6ip4_A6e-75284138346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214RKKRKR
213451351RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G03610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109270.0AK110927.1 Oryza sativa Japonica Group cDNA clone:002-173-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0D9VPM40.0A0A0D9VPM4_9ORYZ; Uncharacterized protein
STRINGLPERR03G03610.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein