PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G03470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 238aa    MW: 24980.6 Da    PI: 5.9513
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G03470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-3971071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp  +r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+++l+a+
  LPERR03G03470.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPLADRAEAAVTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQ 100
                      7*************************89****************************************************************** PP

           DUF260  94 lallkee 100
                      la+lk++
  LPERR03G03470.1 101 LASLKAQ 107
                      **99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3386108IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-387105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD  60
RAEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAQATA QGMHHHHTAS  120
AAAAAAEQLG YAGYDQWCGA AAAQTQPCGA YSSNNGGGQD QSLTALLAAG SADYYMQQSL  180
YHAFESEGAG AVDDDDCGQA AAAAESSFGG EDSGWRSSSG YQDCEDLQSV AYAYLNRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7363751e-134AY736375.1 Oryza sativa (japonica cultivar-group) adventitious rootless1 (ARL1) mRNA, complete cds.
GenBankAB2002341e-134AB200234.1 Oryza sativa Japonica Group CRL1 mRNA for LOB domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632119.11e-117PREDICTED: LOB domain-containing protein 29
TrEMBLA0A0D9VPK91e-173A0A0D9VPK9_9ORYZ; Uncharacterized protein
STRINGBGIOSGA011445-PA1e-118(Oryza sativa Indica Group)
STRINGORGLA03G0035900.11e-118(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.14e-57LBD family protein