PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G03460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 188aa    MW: 19983.4 Da    PI: 6.3292
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G03460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.62.5e-39141141100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkCa++Cv+apyf+ae+ +++fa++hk+FGasn  kll+++++++r++++++++yeA+ar+rdPvyG+v++i++lqqql++l+++
  LPERR03G03460.1  14 PCGACKFLRRKCAAECVFAPYFCAEDgAAQFAAIHKVFGASNAAKLLQHVDPSDRSEVAATVTYEAQARLRDPVYGCVAHIFALQQQLATLQVQ 107
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      +a++k++
  LPERR03G03460.1 108 VAQAKTQ 114
                      **99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.20613115IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3714112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASTGGVGGV AGSPCGACKF LRRKCAAECV FAPYFCAEDG AAQFAAIHKV FGASNAAKLL  60
QHVDPSDRSE VAATVTYEAQ ARLRDPVYGC VAHIFALQQQ LATLQVQVAQ AKTQVAQTLA  120
AAGMMTAAGT NPLLQQMHQQ QQAWQMEHDQ SMTSTQSSGC YSAPRSDGST SLQDMYCFGE  180
QEEGSYSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2002350.0AB200235.1 Oryza sativa Japonica Group CRLL1 mRNA for LOB domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649405.11e-115PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9M2J71e-53LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A0D9VPK81e-137A0A0D9VPK8_9ORYZ; Uncharacterized protein
STRINGOB03G13880.11e-115(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102623344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-39lateral organ boundaries-domain 29