PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G02580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 378aa    MW: 40655.6 Da    PI: 4.9713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G02580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12202244754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  LPERR03G02580.1 202 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 244
                      79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16199268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-13201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-16202265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.40E-5202249No hitNo description
PfamPF000101.8E-9202244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MELDEESFLD ELMSLRREGS SPWQPAPYPG SGAGAGGGMM MSDLLFYGGE RGAGLEASPF  60
HELTPMPPPP PPHQHPQQHE EFNFDCLSEV CNPYRLVPSE AAITSQTQQQ QQQQQQKQLT  120
PLRLGDAMVA EEETSGGGGG DKPAAFHGGA RGSSSSPTFM FGGGGGESSE MMAGGGGGIR  180
CGGVGGVHPR SKLHGTPSKN LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY  240
VKELTERIKS LEEEIGATPE ELDLLNTMKD SSSANSNEML VRNSTKFDVE RRGSGSTRIE  300
ICCPANPGVL LSTVSALEVL GLEIEQCVVS CFSDFGMQAS CLQEDGKRQV ISTDEIKQTL  360
FRSAGYGGRN CSSGFVLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203210ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G02580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.10.0transcription factor bHLH93
SwissprotQ9LSL19e-65BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D9VP940.0A0A0D9VP94_9ORYZ; Uncharacterized protein
STRINGLPERR03G02580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.17e-65beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]