PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G31040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 216aa    MW: 22479.5 Da    PI: 7.9578
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G31040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.34.5e-37201211101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrr+C+++Cv+apyf +e+ +++fa++hk+FGasn +kll++lp ++r +a+ +++yeA+ r+rdPvyG+v+ i++lqqq++ l+a+
  LPERR02G31040.1  20 PCGACKFLRRRCVAECVFAPYFSSEHgAARFAAIHKVFGASNASKLLSHLPVSDRCEAVVTITYEAQSRLRDPVYGCVAQIFALQQQVAILQAQ 113
                      7*********************999979****************************************************************** PP

           DUF260  94 lallkeel 101
                      l ++k++l
  LPERR02G31040.1 114 LMQAKAQL 121
                      *9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.59319121IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3620118IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSSSGTPTAG AAAAAGAGSP CGACKFLRRR CVAECVFAPY FSSEHGAARF AAIHKVFGAS  60
NASKLLSHLP VSDRCEAVVT ITYEAQSRLR DPVYGCVAQI FALQQQVAIL QAQLMQAKAQ  120
LACSSPVSHH HHQQWPENGS ISALLRQDMA ARSRPGSLED CFGIGGGGGA LLPELMAAGF  180
GGKEDSIAGG CSKAVDAGEL QYLAQAMMRS TSNYSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641871e-119AK064187.1 Oryza sativa Japonica Group cDNA clone:002-104-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626197.11e-110PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB77e-61LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D9VMS91e-157A0A0D9VMS9_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g57490.11e-109(Oryza sativa Japonica Group)
STRINGBGIOSGA005344-PA1e-109(Oryza sativa Indica Group)
STRINGORGLA02G0327800.11e-109(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105993443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-38lateral organ boundaries-domain 16